Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2200 ATGTTCCCTCTCCTCCGTAAACCCATTCCCCTTTCCTTTCCCTCACGCAGAACATTACACCTCTCTCCTATCCTTCTCCGGAACATTCCTCAACATTCCAATTCCAAACCTCCCTCTCCCGACCTCCTCGACCGCATCTCCCGCCTCCTCCTCCTTGGCCGCCCCGCCGCTCTCAGCCGCCTCCGCTTCCCCCTCTCAGACCCCCTCACCGATGCCCTCCTACGCCGCCTCCGCCTCCACCCCGCCGCCGCCCTCGCCCTCTTCCACCTCGCCGCCCAACAACCCAACTACCGCCCCCACGCCACCTCCTTCTGCCTCCTCCTCCACATCCTCGCCCGCGCCAAACTCTTCCCCGAAGCCCGCTCCCTCCTCCACCAACTCCTCTCCCTCCACTGCACCAACAACTACCGCGCCTTCGCCGTCTGCCAAGACGTTTTTTCCATCTACAAGGAATTTGGCTTTTCCCCCACCCTCCTCGACATGCTCCTCAAGGCCTTCGCCGAACGCGGCATGACGCGCCACGCACTCCACGTGTTCGACGAAATGTGCAGGCTTGGCAGGACCCCCAGCCTCAGGTCCTGCAATTGCCTGCTCGCTAGGCTGGTTCGTGCTGGTGAAGGAGGCTCGGCGCTTGCTGTTTTTGAGCAGGTTTTGAAGATGGGGATTGTGCCTGACGTTTTCATGATTAGTATTGTTGTGAATGCGCATTGTCGGGAAGGGAAGGTGGATTGTGCTGAGAGGTTTGTGGAGAAGATGGAGGGGATGGGGTTTGAGGTTAATGTTGTGGTGTACAATGCTTTGGTTGGAGGGTATGCTTGTAAGGGTGATGTGGGAGAAGCTGAGAGGGTGCTGAGTTTAATGTCTAAGAAAGGGGTTGAAAGAAATGTGGTCACTTGGACTTTGTTGATGAAAAGTTACTGCAGGCAGGGAAGGGTGGATGAGGCCGAGAGGTTGCTTCGGAAAATGGAGGAGGGTGAGGGGAATTTTGTGGATGATCGCGTGTATGGCTTGCTGGTGGATGGGTATTGTCAGGTGGGGAAGATGGATGATGCGGTTAGGATTAGAGATGAGATGGCAAGTGTGGGGTTGAGGGTGAATGTGTTTGTTTGTAATGCGTTGGTTAATGGATATTGTAAGCAGGGTGGGATTGGGAGGGCCGAAGAGGTGTTTAGGGGGATGTTGGATTGGAATGTGAGACCGGATTGTTATAGCTATAATACGCTGTTGGATGGGTACTGCAGGGAAGGGAGAATGAAGGAGGCTTTGATGCTTTGTGAGGAGATGTTAAGGGAGGGAATTGATCCTTCTGTTGTCACCTATAATACGGTTCTCAAAGGGTTGGTCGATGTGGGGTCTTACGGCGATGCTTTGAGCCTTTGGCGTTCGATGGTGGAACGAGATGTGGTGCCGAATGAAGTCAGCTGCTGTACTCTGCTTGATTGTTTTTTCAAAATGGGAGATTCTGACGGGGCTATAATGTTTTGGAAAGAGATTTTAGGTCGGGGTTTTACTAATAGCACTGTTGCATTCAATACAATGATCGGTGGGCTGTGTAAGATGGGGAAAGTGGTGGAGGCAAAGGTTGTTTTTGATAGGATGAATGAACTTGGATGCTCTCCAGATGAAATAACATATAGGGCTTTGAGTGCTGGATATTGTAAAACTGGGAGTGTGGTTGAAGCTTTTAGAATTAAGGATATGATGGAAAGACAAACAATTTCTCCTTCCATTGAAATGTACAATTCCCTTATTTATGGACTTTTTAAGTCTAGGAAGTCAAGTGATGTTGCTGATCTTCTTGTGGAGTTGCGGAGGAGAGGACTATCACCAAATACTGTTACCTATGGTACCCTTATTTACGGTTGGTGCAATGAAGGGAAGCTGGATAAAGCTTTTAATTTATATTTTGAGATGATCGAAAGAGGGTTCTCTCCTAATTTTGTTATCTGTAGCAAAATAGTCAGCAGTCTTTATAAGAATGATAGAATCAATGAAGCAACTGTGATTCTAGACAAGATGGTGGATTTTGATCTTCTTACAGTTCATAAATGTACTGATAAGTCTGTTAAAAATGATTTCACAAGTCTAGAAGCTCAGAGAATTGCTGATTCTCTTGATAAAATTGCTATATGTAATTCTCTTCCCAACAATATTGTGTACAACATAGCTATCTATGGTCTTGGCAAGTCTGGGAAGATTGATGAAGCAGGAACTGTTCTGTCAATTTTGTTATCTAGAGGTTTTATTCCAGATAATTTCACATATGGTGCCTTAATTCATGCCTGTTCAGCAGCTGGTGATGTGGATGGTGCTTTCAAATTAAGGAATGAGATGCTGGAGAGAGGTCTTATTCCAAATATTACTACATATAATGCTATAATAAATGGGTTATGCAAATTGGGAAATATGGAACGAGCACAGAGACTTTTTCGTAAACTTCCTCAAAAGGGCTTAGCCCCAAATGCTGTTACCTATAATATACTGATCAGTGGTTACTGTAGGATTGGGAACCTTAATGAAGCCTCTAACTTGAGAGAGAAGATGATAGAAGAAGGGATTTCTTGA 2565 0.469 MFPLLRKPIPLSFPSRRTLHLSPILLRNIPQHSNSKPPSPDLLDRISRLLLLGRPAALSRLRFPLSDPLTDALLRRLRLHPAAALALFHLAAQQPNYRPHATSFCLLLHILARAKLFPEARSLLHQLLSLHCTNNYRAFAVCQDVFSIYKEFGFSPTLLDMLLKAFAERGMTRHALHVFDEMCRLGRTPSLRSCNCLLARLVRAGEGGSALAVFEQVLKMGIVPDVFMISIVVNAHCREGKVDCAERFVEKMEGMGFEVNVVVYNALVGGYACKGDVGEAERVLSLMSKKGVERNVVTWTLLMKSYCRQGRVDEAERLLRKMEEGEGNFVDDRVYGLLVDGYCQVGKMDDAVRIRDEMASVGLRVNVFVCNALVNGYCKQGGIGRAEEVFRGMLDWNVRPDCYSYNTLLDGYCREGRMKEALMLCEEMLREGIDPSVVTYNTVLKGLVDVGSYGDALSLWRSMVERDVVPNEVSCCTLLDCFFKMGDSDGAIMFWKEILGRGFTNSTVAFNTMIGGLCKMGKVVEAKVVFDRMNELGCSPDEITYRALSAGYCKTGSVVEAFRIKDMMERQTISPSIEMYNSLIYGLFKSRKSSDVADLLVELRRRGLSPNTVTYGTLIYGWCNEGKLDKAFNLYFEMIERGFSPNFVICSKIVSSLYKNDRINEATVILDKMVDFDLLTVHKCTDKSVKNDFTSLEAQRIADSLDKIAICNSLPNNIVYNIAIYGLGKSGKIDEAGTVLSILLSRGFIPDNFTYGALIHACSAAGDVDGAFKLRNEMLERGLIPNITTYNAIINGLCKLGNMERAQRLFRKLPQKGLAPNAVTYNILISGYCRIGNLNEASNLREKMIEEGIS* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2200 854 Gene3D Tetratricopeptide repeat domain 569 679 IPR011990 GO:0005515
Pvu9g2200 854 Pfam PPR repeat 369 397 IPR002885 -
Pvu9g2200 854 Pfam PPR repeat 162 186 IPR002885 -
Pvu9g2200 854 Pfam PPR repeat 473 503 IPR002885 -
Pvu9g2200 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 751 785 IPR002885 -
Pvu9g2200 854 PANTHER ATPASE EXPRESSION PROTEIN 3 19 842 - -
Pvu9g2200 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Pvu9g2200 854 Pfam PPR repeat family 715 762 IPR002885 -
Pvu9g2200 854 Pfam PPR repeat family 785 834 IPR002885 -
Pvu9g2200 854 Pfam PPR repeat family 404 448 IPR002885 -
Pvu9g2200 854 Pfam PPR repeat family 506 554 IPR002885 -
Pvu9g2200 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Pvu9g2200 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Pvu9g2200 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 716 750 IPR002885 -
Pvu9g2200 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 325 IPR002885 -
Pvu9g2200 854 Coils Coil 853 854 - -
Pvu9g2200 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Pvu9g2200 854 Gene3D Tetratricopeptide repeat domain 452 568 IPR011990 GO:0005515
Pvu9g2200 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 821 854 IPR002885 -
Pvu9g2200 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 224 IPR002885 -
Pvu9g2200 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
Pvu9g2200 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
Pvu9g2200 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Pvu9g2200 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Pvu9g2200 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Pvu9g2200 854 Gene3D Tetratricopeptide repeat domain 705 854 IPR011990 GO:0005515
Pvu9g2200 854 Gene3D Tetratricopeptide repeat domain 245 360 IPR011990 GO:0005515
Pvu9g2200 854 Gene3D Tetratricopeptide repeat domain 361 451 IPR011990 GO:0005515
Pvu9g2200 854 Gene3D Tetratricopeptide repeat domain 141 242 IPR011990 GO:0005515
Pvu9g2200 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Pvu9g2200 854 SUPERFAMILY HCP-like 304 540 - -
Pvu9g2200 854 PANTHER - 19 842 - -
Pvu9g2200 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 786 820 IPR002885 -
Pvu9g2200 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Pvu9g2200 854 TIGRFAM PPR: pentatricopeptide repeat domain 438 472 IPR002885 -
Pvu9g2200 854 TIGRFAM PPR: pentatricopeptide repeat domain 369 402 IPR002885 -
Pvu9g2200 854 TIGRFAM PPR: pentatricopeptide repeat domain 193 226 IPR002885 -
Pvu9g2200 854 TIGRFAM PPR: pentatricopeptide repeat domain 718 751 IPR002885 -
Pvu9g2200 854 TIGRFAM PPR: pentatricopeptide repeat domain 334 366 IPR002885 -
Pvu9g2200 854 TIGRFAM PPR: pentatricopeptide repeat domain 823 854 IPR002885 -
Pvu9g2200 854 TIGRFAM PPR: pentatricopeptide repeat domain 508 542 IPR002885 -
Pvu9g2200 854 TIGRFAM PPR: pentatricopeptide repeat domain 229 261 IPR002885 -
Pvu9g2200 854 TIGRFAM PPR: pentatricopeptide repeat domain 473 503 IPR002885 -
Pvu9g2200 854 TIGRFAM PPR: pentatricopeptide repeat domain 262 295 IPR002885 -
Pvu9g2200 854 TIGRFAM PPR: pentatricopeptide repeat domain 789 822 IPR002885 -
Pvu9g2200 854 TIGRFAM PPR: pentatricopeptide repeat domain 161 190 IPR002885 -
Pvu9g2200 854 TIGRFAM PPR: pentatricopeptide repeat domain 579 612 IPR002885 -
Pvu9g2200 854 TIGRFAM PPR: pentatricopeptide repeat domain 753 787 IPR002885 -
Pvu9g2200 854 TIGRFAM PPR: pentatricopeptide repeat domain 297 324 IPR002885 -
Pvu9g2200 854 TIGRFAM PPR: pentatricopeptide repeat domain 613 646 IPR002885 -
Pvu9g2200 854 TIGRFAM PPR: pentatricopeptide repeat domain 403 436 IPR002885 -
Pvu9g2200 854 Pfam PPR repeat 331 358 IPR002885 -
Pvu9g2200 854 Pfam PPR repeat 290 323 IPR002885 -
Pvu9g2200 854 Pfam PPR repeat 255 287 IPR002885 -
Pvu9g2200 854 Pfam PPR repeat 220 253 IPR002885 -
Pvu9g2200 854 Pfam PPR repeat 606 638 IPR002885 -
Pvu9g2200 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2200 347 854 Glycosyltransferase AT1G05670 27.165 4.02e-64 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2200 - K17964 gmx:100811926 1392.48