Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2160 ATGGTTCTGGATATGGAAAAGAGTATATACACTTTTCTCACAGTACACCGTTGGGAGTCACTGAACTGTATGAAATATAGATTGTCTTCCCTTAGGCCTGTTCATGGAAGGTTGGCTCTGAAATTTCTCAATTGGGTCATAAAGCAACGCAATTTAGAGCTCAAACATGTTACTCATATTATCTGCACTACTACCCACATACTTGTTAGAGCTAGAATGTACAACTTTGCCAAAACAACCTTAAAGCATATGCTACAACTGCCTATTGGTTTGAACTCTGTCTTTTGTGCTTTGATGGAGACATACCCCATTTGCAACTCAAACCCAGCTGTTTTTGACCTCCTGATTAGGGTTTGTTTAAGGGACAAGATGGTTGGAGATGCTGTGCAGACTTTCTACTTAATGGGGTTTCGGGGACTGAAGCCGTCTGTATATACTTGTAACATGGTGTTAGGTTCCCTTGTAAAGGAGCAGAAAGTTGATATGTTTTGGTCCTTTTTCAAAGAGATGCTTACCAAAGGGATTTGTCCTAATGTTGCTACATTCAACATATTGTTGAATGCATTGTGCCAACGGGGGAAGTTTAAAAGTGCTGGCTTTCTCTTGAGGAAAATGGAAGAAAGTGGTGTTTATCCGACTGCCGCCACATACAATACCTTGCTTAATTGGTATTGCAAGAAAGGAAGGTACAAAGCAGCATCTAAGTTGATTGACTCCATGACATCTAAGGGTATTGCGGCAGATGTTTGTACATATAATGTTTTGATAGGGAATTTGTGCAAGGAAGGCAGGAGTGCAAAAGGTTATTTACTGTTGAAAAGGATGAGAAGAAATATGGTGTATCCTAATGAGATAACTTATAATTCTCTTATTAATGGATTTGTTAAGGAGGGGAAAATTGCAGTTGCTGCAAAAGTTTTTGATGAGATGTCATCATTTAATTTGTTACCCAACATTGTCACTTACAATACTTTGATTGCTGGGCACTGTAGGACAGGCAACAATGGGGAGGCATTGAGACTGATGGATGTTATGGTATCATGTGGTTTAAGACCTAATGAAGTTACATATGGAGCTCTTTTGAATGGGCTATCCAAGCATGCTGAATTTGGATTGGTTTCTAGTATTCTTGAGAGAATGAGGATGGATGGGGTGGGAGTTGGTCACATTAGTTACTCAGCAATGATTGATGGATTGTGCAAGAATGGCAGGCTTGAAGAAGCTGTGCAATTGTTGGATGATATGTTAAAAAATTCTGTTAGTCCTGATGTTGTTACATTTTCGGTGCTCATAAATGGATTTTTCAGGGTGGGGAAGATAAATAATGCAAAGGAGATTATGTGTAAGATGTATAAGACTGGACTTGTGCCAAATAGCATTTTGTATTCAACATTAATATACAATTATTGCAAAATGGGATACTTAAAAGAGGCATTAAATGCTTATGCAATTATGAATCATAGTGGTTATGCTGCTGATCACTTTACATGTAATGTGTTGATTGCCGCTTTCTGTAGATGTGGAAGACTTGAAGAGGCTGAGTATTTTATGGAACACATGAACAGAATTGGTCTTGATCCTAACTCTATTACTTTTGATTGTGTTATAAATAGTTACGGAAATTCTGGTGATGCGTTAAAAGCTTTTTATATGTTTGATAAAATGAATTGGTTAGGTCATTTGCCCAGTCAATTCACGTATGGGAGTTTATTGAAAGCACTTTGCATAAGTGGACATATTAATGAAGCCTGGAAGCTTTTCCATAGATTTTGTTCTGTTCCTAATGCTGTCGATAATGTTATCTTCAACACAATGCTTACTTCTACTTGTAGATCAGGAAATTTATCCGATGCAGTTGCCCTTATTGATGAGATGGTTACAAATGATTTTCTGCCTGACAATTTTACATACACTAATCTTATTACGGGGCTATGCAAGAAGGGTAAAATAGTTGCAGCACTCCTTTTGTCAGGAAAGGCAATTGAAAAAAGATTATTATCTCCAAATCCTGCCGTGTACACCAGCTTAGTCTATGGTCTTCTTAAGCATGGACATTCAAGAGCAGCTTTGTTTATTTTTGAAGAAATGCTAAGCAAAGGAGTGGAGCCTGATACTATAGCATTCAATGTGATTATAGATCAATACTTAAGGAGAGGGAGAACGTCGGAGGTCAATGATATTCTTTCAACAATGAAGAGTAAAAATGTATGCTTCAATTTGGCTACTTACAACATCCTTCTACATGCACATGCAAAGAGGAATGCAATGACAAGATGTTTAATGTTATACAAAGACATGATCAGAAACGGTTTTCTACCAGATAAGTATTCATGGAACTCTCTTATTCTTGGATATTGTAGGTCCAAATCATTTGATGTTGCTATTAAAATTTTAAGATGGATAACACTTAAAGGTTTCATAACGGATTGCTCTACATTTAACATTCTTATGTCCAAGTTCTGTGAAAGGAATGAGATGAAAATGGCCTATGATCTGTTAAATCACATGAATCAGTTTACAATAATTCCTAATGTAGATACATACAATGCCCTTTTTAATGGACTCATTAGAACTAGTGATTTTGATAAAGCTCATCATGTTTTGCAAGCCTTGTTGGAAAGTGGTTCTGTTCCTACGAGTAAACAATATATTACTTTAATCAATGGTATGTGTAGACTTGGGAACATAAAAGGAGCATTGAAAGTTCAAGATGAAATGAAAACACATGGTGTCAGCTCCCACTATGTTGCAATGAGTGCTACTGTTAGAGGGCTTGCACATTCAAAGAAAACAGAAAATGCTATTTGGGTTCTTGATTTGATGCTTGAGATGCAAGTCATTCCAACTGTTGCTACTTTCACTACATTAATGCACGTCTATTGCAAAGAAGCTAATGTTGCAAAAGCTTTAGAATTGAGGAGCACGATGGAACATTGTCATTTGAAGCTTGATGTTGTTGCGTATAATGTTCTTATATCTGGCCTTTGTGCTAATGGAGATATTGAAGCAGCTTTTAAACTTTATGAAGAGATGAAACAAAGAAATCTTTGGCCTAATACCTCTATATACATTGTTCTTATTGATTCTCTCTGTGCTGGAAATTATCATACTCAAAAATGTGTTGATGTGGCTGAACCAACAGTTCTGTTACTCATCCAGATGTGA 3165 0.3671 MVLDMEKSIYTFLTVHRWESLNCMKYRLSSLRPVHGRLALKFLNWVIKQRNLELKHVTHIICTTTHILVRARMYNFAKTTLKHMLQLPIGLNSVFCALMETYPICNSNPAVFDLLIRVCLRDKMVGDAVQTFYLMGFRGLKPSVYTCNMVLGSLVKEQKVDMFWSFFKEMLTKGICPNVATFNILLNALCQRGKFKSAGFLLRKMEESGVYPTAATYNTLLNWYCKKGRYKAASKLIDSMTSKGIAADVCTYNVLIGNLCKEGRSAKGYLLLKRMRRNMVYPNEITYNSLINGFVKEGKIAVAAKVFDEMSSFNLLPNIVTYNTLIAGHCRTGNNGEALRLMDVMVSCGLRPNEVTYGALLNGLSKHAEFGLVSSILERMRMDGVGVGHISYSAMIDGLCKNGRLEEAVQLLDDMLKNSVSPDVVTFSVLINGFFRVGKINNAKEIMCKMYKTGLVPNSILYSTLIYNYCKMGYLKEALNAYAIMNHSGYAADHFTCNVLIAAFCRCGRLEEAEYFMEHMNRIGLDPNSITFDCVINSYGNSGDALKAFYMFDKMNWLGHLPSQFTYGSLLKALCISGHINEAWKLFHRFCSVPNAVDNVIFNTMLTSTCRSGNLSDAVALIDEMVTNDFLPDNFTYTNLITGLCKKGKIVAALLLSGKAIEKRLLSPNPAVYTSLVYGLLKHGHSRAALFIFEEMLSKGVEPDTIAFNVIIDQYLRRGRTSEVNDILSTMKSKNVCFNLATYNILLHAHAKRNAMTRCLMLYKDMIRNGFLPDKYSWNSLILGYCRSKSFDVAIKILRWITLKGFITDCSTFNILMSKFCERNEMKMAYDLLNHMNQFTIIPNVDTYNALFNGLIRTSDFDKAHHVLQALLESGSVPTSKQYITLINGMCRLGNIKGALKVQDEMKTHGVSSHYVAMSATVRGLAHSKKTENAIWVLDLMLEMQVIPTVATFTTLMHVYCKEANVAKALELRSTMEHCHLKLDVVAYNVLISGLCANGDIEAAFKLYEEMKQRNLWPNTSIYIVLIDSLCAGNYHTQKCVDVAEPTVLLLIQM* 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2160 1054 TIGRFAM PPR: pentatricopeptide repeat domain 320 354 IPR002885 -
Pvu9g2160 1054 TIGRFAM PPR: pentatricopeptide repeat domain 600 633 IPR002885 -
Pvu9g2160 1054 TIGRFAM PPR: pentatricopeptide repeat domain 530 555 IPR002885 -
Pvu9g2160 1054 TIGRFAM PPR: pentatricopeptide repeat domain 425 458 IPR002885 -
Pvu9g2160 1054 TIGRFAM PPR: pentatricopeptide repeat domain 672 705 IPR002885 -
Pvu9g2160 1054 TIGRFAM PPR: pentatricopeptide repeat domain 847 879 IPR002885 -
Pvu9g2160 1054 TIGRFAM PPR: pentatricopeptide repeat domain 285 318 IPR002885 -
Pvu9g2160 1054 TIGRFAM PPR: pentatricopeptide repeat domain 495 522 IPR002885 -
Pvu9g2160 1054 TIGRFAM PPR: pentatricopeptide repeat domain 952 984 IPR002885 -
Pvu9g2160 1054 TIGRFAM PPR: pentatricopeptide repeat domain 883 912 IPR002885 -
Pvu9g2160 1054 TIGRFAM PPR: pentatricopeptide repeat domain 181 213 IPR002885 -
Pvu9g2160 1054 TIGRFAM PPR: pentatricopeptide repeat domain 565 591 IPR002885 -
Pvu9g2160 1054 TIGRFAM PPR: pentatricopeptide repeat domain 986 1016 IPR002885 -
Pvu9g2160 1054 TIGRFAM PPR: pentatricopeptide repeat domain 390 424 IPR002885 -
Pvu9g2160 1054 TIGRFAM PPR: pentatricopeptide repeat domain 216 248 IPR002885 -
Pvu9g2160 1054 TIGRFAM PPR: pentatricopeptide repeat domain 145 179 IPR002885 -
Pvu9g2160 1054 TIGRFAM PPR: pentatricopeptide repeat domain 250 283 IPR002885 -
Pvu9g2160 1054 TIGRFAM PPR: pentatricopeptide repeat domain 742 774 IPR002885 -
Pvu9g2160 1054 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
Pvu9g2160 1054 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
Pvu9g2160 1054 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Pvu9g2160 1054 Gene3D Tetratricopeptide repeat domain 912 1045 IPR011990 GO:0005515
Pvu9g2160 1054 Gene3D Tetratricopeptide repeat domain 160 267 IPR011990 GO:0005515
Pvu9g2160 1054 Gene3D Tetratricopeptide repeat domain 736 828 IPR011990 GO:0005515
Pvu9g2160 1054 Gene3D Tetratricopeptide repeat domain 268 372 IPR011990 GO:0005515
Pvu9g2160 1054 Gene3D Tetratricopeptide repeat domain 21 159 IPR011990 GO:0005515
Pvu9g2160 1054 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 528 562 IPR002885 -
Pvu9g2160 1054 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 984 1018 IPR002885 -
Pvu9g2160 1054 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 142 IPR002885 -
Pvu9g2160 1054 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 774 808 IPR002885 -
Pvu9g2160 1054 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 844 878 IPR002885 -
Pvu9g2160 1054 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Pvu9g2160 1054 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Pvu9g2160 1054 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 2 1003 - -
Pvu9g2160 1054 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 950 1032 - -
Pvu9g2160 1054 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Pvu9g2160 1054 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 879 913 IPR002885 -
Pvu9g2160 1054 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 2 1003 - -
Pvu9g2160 1054 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 950 1032 - -
Pvu9g2160 1054 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 598 632 IPR002885 -
Pvu9g2160 1054 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 669 703 IPR002885 -
Pvu9g2160 1054 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 949 983 IPR002885 -
Pvu9g2160 1054 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 809 843 IPR002885 -
Pvu9g2160 1054 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 458 492 IPR002885 -
Pvu9g2160 1054 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Pvu9g2160 1054 Pfam PPR repeat 559 588 IPR002885 -
Pvu9g2160 1054 Pfam PPR repeat 875 907 IPR002885 -
Pvu9g2160 1054 Pfam PPR repeat 280 311 IPR002885 -
Pvu9g2160 1054 Pfam PPR repeat 946 977 IPR002885 -
Pvu9g2160 1054 Pfam PPR repeat 454 479 IPR002885 -
Pvu9g2160 1054 Gene3D Tetratricopeptide repeat domain 657 735 IPR011990 GO:0005515
Pvu9g2160 1054 Gene3D Tetratricopeptide repeat domain 835 911 IPR011990 GO:0005515
Pvu9g2160 1054 Gene3D Tetratricopeptide repeat domain 593 656 IPR011990 GO:0005515
Pvu9g2160 1054 Gene3D Tetratricopeptide repeat domain 373 450 IPR011990 GO:0005515
Pvu9g2160 1054 Gene3D Tetratricopeptide repeat domain 520 592 IPR011990 GO:0005515
Pvu9g2160 1054 Gene3D Tetratricopeptide repeat domain 451 519 IPR011990 GO:0005515
Pvu9g2160 1054 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Pvu9g2160 1054 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 739 773 IPR002885 -
Pvu9g2160 1054 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 143 177 IPR002885 -
Pvu9g2160 1054 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 247 IPR002885 -
Pvu9g2160 1054 Pfam PPR repeat family 212 261 IPR002885 -
Pvu9g2160 1054 Pfam PPR repeat family 317 366 IPR002885 -
Pvu9g2160 1054 Pfam PPR repeat family 493 539 IPR002885 -
Pvu9g2160 1054 Pfam PPR repeat family 142 191 IPR002885 -
Pvu9g2160 1054 Pfam PPR repeat family 984 1031 IPR002885 -
Pvu9g2160 1054 Pfam PPR repeat family 739 787 IPR002885 -
Pvu9g2160 1054 Pfam PPR repeat family 811 856 IPR002885 -
Pvu9g2160 1054 Pfam PPR repeat family 668 713 IPR002885 -
Pvu9g2160 1054 Pfam PPR repeat family 390 435 IPR002885 -
Pvu9g2160 1054 Pfam PPR repeat family 598 646 IPR002885 -
Pvu9g2160 1054 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 704 738 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2160 161 731 Glycosyltransferase AT1G05670 26.609 4.42e-64 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2160 - K17964 gmx:100817407 1830.07