Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2128 ATGGTTTCTCTTAGTATCTCGTCACGACAACTATTTTCAAATCTCCGTTTCATTTCCGTCCCCACCTTCAATTCCCACCTTAGGTGCTTTTGTTCTGACCACCCAGAATCTCCAAACGCAAGACTCAGATCACGAAATGCAAGTAAAACCGCCAAAAACATGGCCGATCTTATAAATTCCAAACCATGGTCAAACGCGTTGGTCTCTCCTCTGCCCACCCCTCTCTCCAAAACGACGGTGCTCCGAACACTTCGCCTCATCAAGGACCCTTCCAAAGCCCTCCACTTTTTTAAGTGGGCTCAGCAAAGTGGTTTTCCCCACACAGCTCAGTCCTACTTCATCATGCTACAAATTCTGGGTCGCCATAGGAACCTAAATGTGGCTCGAAACTTGCTTTTTTCCATCGAGAAAAAGTCCAACGGAACCGTCAAGCTTGGGGACAGGTTCTTCAATACCCTCATCAGAAGCTACGCCGAAGCGGGCCTCTTCAAAGAGTCCTTGAAGCTTTTCCAAACCATGAAGTCCGTTGCTGTGTCCCCATCCGTGGTTACCTTCAATTCTGTTTTGTCTATTTTGCTTAAAAGGGGTCGCACCAATATGGCCAAAGAGGTGTATGATGAAATGCTTCATACATATGGTGTTACTCCAGACATTTGTACATACAATGTTTTGATCAGAGGATTTTGCAAGAACTCAATGGTCGATGAAGGGTTTCGGTTCTTCAATGAGATGGCTACTGTTAATTGTGATCCAGATATTGTCACGTATAACACGCTTGTTGATGGTTTGTGTAGAGCGGGGAAGGTCAGAATTGCTCGGAATTTAGTAAATGCTATGACCAAGAAATGTGAGGGTTTGAATCCTAATGTTGTTACTTATACCACTTTGATTCGAGGGTATTGTATGAAGCAAGAAGTTGATGAGGCATTGGTTGTTCTTGAAGAGATGAGTGGCCGGGGCATTGAGCCCAACATGATTACATATAATACTTTGATAAAAGGGCTTTGTGAGGCACACAAGTTGGACAAGATGAAAGATGTTTTGAAATGGATGAAAGACAATGGAGGTTTTAGCCCTGATACATTTACCTTCAATACGATTATTCATTCGCATTGTTGTGCAGGAAATCTGGATGAAGCATTGAAGGTGTTTGAAAGCATGAAGAAATTTCAGGTCCGTATGGATTCAGCCTCGTACAGCACTCTGATACGTAGTTTGTGTCAGAAAGGGGACTACGATATGGCAGAGTTGCTATTTGATGAGTTATTTGAGAAGGAAATCCTTTTGTGTAATTTTGGCTCCAAGCCACTTGTGGCTGCTTACAGTCCTCTTTTTCAGTATTTGTGTGAACATGGGAAGAGTAAGAAGGCTGAGAGGGTAATGAGACAGTTAATGAAAAGGGGCACACAAGATGCCCAGTCATACAAAACATTGATTATGGGGCATTGTAAAGAAGGTGCATATGAAAGTGGATATGAGTTTTTAGTGTGGATGCTAAGAAGAGACTTTCTTCCTGATGTTGATATATATGATTATTTGATTGATGGTTTTCTTTTAAAGAATAAGCCTCTGCTTGCAAAGGAGACACTAGAGAAAATGCTTAAGAGCTCCTATCAACCTAAAACAGCCACCTGGCATTCTATACTGGCAAAACTTTTGGAAAAGGGTTGTGCTCATGAGTCTGCCTGTGTTATTATGATGATGCTGGAGAAAAATGTTAGACAGAATATAAACATGTCAACTGAGAGTTTAAAGCTACTTTTTGGATGTGGACAGCATGAAAGAGCATTTGAGATTATTGATTTGCTTTATAAGAATGGATACCGGGTTAAAATAGAAGAAGTGGTTCAATTTCTTTTTGAGAGAGGAAAGCTGTCAGAAGCATGCAAACTGTTGCTTTTTAGTTTGGAAATTCATCAGAATGTCGATATTGATTTGTGTAATGCAATTGTTTTGAATCTTTGTAAAGCTAACAAGGTCTCAGAAGCATTTAATTTATGCTATGGATTGGTGGAGAACGGTTTATGTCAGGAATTGACATGTCTAAATGATCTAATGGCTGCTTTAGAGGAAAGGGGAAGAAGAGAGGAAGCAGTATTTATATCAAAGAGATTACCAAAACTGGAGAATTCAGATGGATCAAAGGGAAATCATAGCTGTAAGAAGTCCAGGGCTATTAAAGTCTGA 2187 0.406 MVSLSISSRQLFSNLRFISVPTFNSHLRCFCSDHPESPNARLRSRNASKTAKNMADLINSKPWSNALVSPLPTPLSKTTVLRTLRLIKDPSKALHFFKWAQQSGFPHTAQSYFIMLQILGRHRNLNVARNLLFSIEKKSNGTVKLGDRFFNTLIRSYAEAGLFKESLKLFQTMKSVAVSPSVVTFNSVLSILLKRGRTNMAKEVYDEMLHTYGVTPDICTYNVLIRGFCKNSMVDEGFRFFNEMATVNCDPDIVTYNTLVDGLCRAGKVRIARNLVNAMTKKCEGLNPNVVTYTTLIRGYCMKQEVDEALVVLEEMSGRGIEPNMITYNTLIKGLCEAHKLDKMKDVLKWMKDNGGFSPDTFTFNTIIHSHCCAGNLDEALKVFESMKKFQVRMDSASYSTLIRSLCQKGDYDMAELLFDELFEKEILLCNFGSKPLVAAYSPLFQYLCEHGKSKKAERVMRQLMKRGTQDAQSYKTLIMGHCKEGAYESGYEFLVWMLRRDFLPDVDIYDYLIDGFLLKNKPLLAKETLEKMLKSSYQPKTATWHSILAKLLEKGCAHESACVIMMMLEKNVRQNINMSTESLKLLFGCGQHERAFEIIDLLYKNGYRVKIEEVVQFLFERGKLSEACKLLLFSLEIHQNVDIDLCNAIVLNLCKANKVSEAFNLCYGLVENGLCQELTCLNDLMAALEERGRREEAVFISKRLPKLENSDGSKGNHSCKKSRAIKV* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2128 728 Pfam PPR repeat 474 495 IPR002885 -
Pvu9g2128 728 Pfam Pentatricopeptide repeat domain 150 192 IPR002885 -
Pvu9g2128 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 282 IPR002885 -
Pvu9g2128 728 TIGRFAM PPR: pentatricopeptide repeat domain 219 252 IPR002885 -
Pvu9g2128 728 TIGRFAM PPR: pentatricopeptide repeat domain 150 181 IPR002885 -
Pvu9g2128 728 TIGRFAM PPR: pentatricopeptide repeat domain 291 324 IPR002885 -
Pvu9g2128 728 TIGRFAM PPR: pentatricopeptide repeat domain 183 217 IPR002885 -
Pvu9g2128 728 TIGRFAM PPR: pentatricopeptide repeat domain 362 395 IPR002885 -
Pvu9g2128 728 TIGRFAM PPR: pentatricopeptide repeat domain 326 361 IPR002885 -
Pvu9g2128 728 TIGRFAM PPR: pentatricopeptide repeat domain 254 289 IPR002885 -
Pvu9g2128 728 TIGRFAM PPR: pentatricopeptide repeat domain 398 426 IPR002885 -
Pvu9g2128 728 Gene3D Tetratricopeptide repeat domain 211 281 IPR011990 GO:0005515
Pvu9g2128 728 Gene3D Tetratricopeptide repeat domain 41 210 IPR011990 GO:0005515
Pvu9g2128 728 Gene3D Tetratricopeptide repeat domain 282 354 IPR011990 GO:0005515
Pvu9g2128 728 Gene3D Tetratricopeptide repeat domain 471 616 IPR011990 GO:0005515
Pvu9g2128 728 Gene3D Tetratricopeptide repeat domain 355 470 IPR011990 GO:0005515
Pvu9g2128 728 SUPERFAMILY HCP-like 367 539 - -
Pvu9g2128 728 PANTHER ATPASE EXPRESSION PROTEIN 3 22 710 - -
Pvu9g2128 728 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 22 710 - -
Pvu9g2128 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Pvu9g2128 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Pvu9g2128 728 Pfam PPR repeat family 359 408 IPR002885 -
Pvu9g2128 728 Pfam PPR repeat family 288 336 IPR002885 -
Pvu9g2128 728 Pfam PPR repeat family 216 265 IPR002885 -
Pvu9g2128 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Pvu9g2128 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 395 429 IPR002885 -
Pvu9g2128 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Pvu9g2128 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Pvu9g2128 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Pvu9g2128 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Pvu9g2128 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 216 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2128 Pvu-Chr9 30495363 30499033 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2128 356 698 Glycosyltransferase AT1G05670 24.207 7.96e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2128 - - gmx:100794080 1209.51