Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2108 ATGAAGGTCCGGTCGGTGAAGTTAAGGGAGGCACACGGTGCCATTGGAGGGCGCGCGTCTTTCTGCTCCGTTCTGTGGGACCAGCAAGCCACTCATTTGGTTACCGCTTCCTCTTCCGACATCTCCATCTGTATCCACGACCCCCTTTCTCCCTCCATCTCTCCCAAAATCCTCCGCCACCACCGCGACGGCGTCACTGCCTTGGCTCTAAGCCCCAATTCCACTTGCCTCGCTTCCGGATCCATTGATCGTTCCGTCAAACTCTACAAGTTCCCCGGTGGAGAGTTTGAGAGAAACATTACAAGGTTTACACTTCCAATACGCTCCCTGGCATTTAACAAATCAGGGAGCATGGTGGCTGCTGCTGGTGATGATGAGGGTATCAAGCTTATTAATACATTTGATGGTACCATTACTAGGGTTCTTAAAGGACATAAAGGGTCTGTCACTGGCTTGGCTTTTGACCCTAACGGGGAATACTTAGCCTCTATGGATTCAACTGGAACTGTTATTTTGTGGGAGCTTCAGTCTGGGAAAATCATTCATAACCTCAAAGGCATAGCTCCTGACACTGGACTAGATATTTCAGCTATGAATGTTCTTTGCTGGAGTCCTGATGGTGAGACCTTAGCCGTTCCTGGTTTGAAAAATGATGTTGTAATGTATGACAGGGACACTGCTGAGAAGTTGTTTTCTTTGAGAGGAGATCACATACGGCCAATATGTTTCTTGTGTTGGTCTCCCAATGGCAAGTACATTGCTACCTCTGGTTTAGACAGGCAGGTTCTGATCTGGGATGTTAGTAGGAAGCAGGACATTGACAGACAGAGGTTTGATGAAATAGTGTGTTGCATGGCGTGGAAGCCAATTGGAAACGCTTTGGCTGTTGTGGATGTTATGGGGAAGTATGGTATTTGGGACAATGTTATTCCTTCGTCTATGAAGTCCCCAACTGAGGATATACCTGTGAAATACAAGAGCAATGGGGTTCTTTTGTTTGATGAGGAGGATCGTGAAAATAGTGCAAGTGGAAGCTTGAGTGATATTGGTGAAAATAGTAATGAGGAGTCTGAGCCAACCAGCAGGAAAAGATTGCGTAAACATTCTTTGAGTGAGGAAAATTTAGGTGAGAATGAATGTGAGGAAATTGCATTGTATCCGAAGGTTGGTTCTCACAATAAACGAAATCGATCAAGCAAGGAAAATTTGGATAGTAAGAATCTGGGAGTTAAAGGCACCATGGTAACATCTAAGGCAAAGATGCCGGAGGCATTTCAACCAGGATCTACTCCTTTGCAGCCAGGGAAAAGACGTTTCTTATGCTACAATATGCTTGGATGTATAACCTCTATTGAACACGATGGATACTCCCATATTGAGATTGATTTTCATGATACTGGAAGCACTCCACGAGTTCCTTCAATGACTGATCATTTTGGATTCACAATGGCAGCATTGAGTGAGAATGGGGGCGTCTTTGCAAATCCTTGTAAGGGGGAGAAGAACATGAGCACCCTCATGTATCGCCCATTTAGTAGCTGGGCCAACAATAGCGAGTGGTCTATGCGCTTTGAAGGAGAAGAAGTGAAGGTTGTTGCACTTGGCGCTGCTTGGGTTGCTGCAGTAACTAGTTTGAACTACCTTCGCATCTTTTCTGATGGTGGTTTGCAGAAACATGTGTTTTCACTAGATGGACCAGTGTTGACTGCGTCCGGTTTCAATGAGAAGCTTGCAGTTGTCACTCATGCTTTTGATTACCTTTCCTCAAATGATCAGATGCTAGAGTTTATAGTATTTAATATCCCTCAAGGGATCCAACTCCTTCAAGGTCGCATGCCAATATCTCCTGGTTCATCCCTAAGTTGGTTTGGGTTTAGCGAGGAAGGCCAACTGTGTTCATACGATTCGAAGGGTGTGCTAAGATCATATACGAGCCAATTTGGTGGCAGATGGGTCCCACTCTTCAGTGCTTTAAAAGAGAATTCAAAAGAAAACTACTGGGTAACGGGGTTGAATGCAAGCAAGGTATTTTGTGTGGTATGCAAAAAGCCTGATGACTTCCCTCAGGTCATGCCTAAGCCAGTTCTCACTCCGTTGAGTCTTTCACTTCCCCTTGCTTCCTCTGACTTGGGATCTGAAGTCCATGAAAACGAGTTTATGATGAACAACTTGCATCTCTTTTTGGTTCAGAGAAGAATGGAAGAAATGGCATCTCTAGGTCTGGACACTACTTCACTTGATGACGATGCTTTCAATTTGGAAGCAGCGCAGGATAAATGTATACTGAGGCTAATAGCATCATGCTGCAACAGCAATAAGCTTGTGCGAGCTACTGAACTTGTGAAACTTTTGACTCTGGAAAAATCAGTGAGAGGTGCAATAAAACTTGTTACTGCTCTGAAACTTCCAAACTTGGCCGAAAGGTTCAGCAGCATATTGGAGGAAAGGCTACTGGATGAAGCAGAAAAAGCTATGGGAACCAAGATCAAAGAAAACTGTGTTGCACCCATTAAAGCTGATGCTCTTCATAACGGAAGCAAGGCCCCAACTCGAACTGAAACATTAAATGCAGTTACTATGTCATCATCAGAATTATCTTCTCCATCATTCATAAAGAAACACAAAACTCAAGAGGTAGCTAAAGCTGGCATAATTAGAACTGCAATGGTAAATGAAACTATGAAGGGAAAGCAGACAGGGGAAGAAACAAGGGACAAGGTGGGAGACATGCGTCAGGTGGAACAGACTCCTCATCCATCATATGATCCCTCTACGAAGTCATCAAAGAAGAATGGACTTGACAAATCAGACACTAGTTTGGGACAACCCAGTCGTCCATCCAATCCATTTTTGAAGTCTACTATCAAGTGA 2871 0.4427 MKVRSVKLREAHGAIGGRASFCSVLWDQQATHLVTASSSDISICIHDPLSPSISPKILRHHRDGVTALALSPNSTCLASGSIDRSVKLYKFPGGEFERNITRFTLPIRSLAFNKSGSMVAAAGDDEGIKLINTFDGTITRVLKGHKGSVTGLAFDPNGEYLASMDSTGTVILWELQSGKIIHNLKGIAPDTGLDISAMNVLCWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHIRPICFLCWSPNGKYIATSGLDRQVLIWDVSRKQDIDRQRFDEIVCCMAWKPIGNALAVVDVMGKYGIWDNVIPSSMKSPTEDIPVKYKSNGVLLFDEEDRENSASGSLSDIGENSNEESEPTSRKRLRKHSLSEENLGENECEEIALYPKVGSHNKRNRSSKENLDSKNLGVKGTMVTSKAKMPEAFQPGSTPLQPGKRRFLCYNMLGCITSIEHDGYSHIEIDFHDTGSTPRVPSMTDHFGFTMAALSENGGVFANPCKGEKNMSTLMYRPFSSWANNSEWSMRFEGEEVKVVALGAAWVAAVTSLNYLRIFSDGGLQKHVFSLDGPVLTASGFNEKLAVVTHAFDYLSSNDQMLEFIVFNIPQGIQLLQGRMPISPGSSLSWFGFSEEGQLCSYDSKGVLRSYTSQFGGRWVPLFSALKENSKENYWVTGLNASKVFCVVCKKPDDFPQVMPKPVLTPLSLSLPLASSDLGSEVHENEFMMNNLHLFLVQRRMEEMASLGLDTTSLDDDAFNLEAAQDKCILRLIASCCNSNKLVRATELVKLLTLEKSVRGAIKLVTALKLPNLAERFSSILEERLLDEAEKAMGTKIKENCVAPIKADALHNGSKAPTRTETLNAVTMSSSELSSPSFIKKHKTQEVAKAGIIRTAMVNETMKGKQTGEETRDKVGDMRQVEQTPHPSYDPSTKSSKKNGLDKSDTSLGQPSRPSNPFLKSTIK* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2108 956 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 268 - -
Pvu9g2108 956 Pfam WD domain, G-beta repeat 231 266 IPR001680 GO:0005515
Pvu9g2108 956 Pfam WD domain, G-beta repeat 56 89 IPR001680 GO:0005515
Pvu9g2108 956 Pfam WD domain, G-beta repeat 138 173 IPR001680 GO:0005515
Pvu9g2108 956 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Pvu9g2108 956 ProSitePatterns Trp-Asp (WD) repeats signature. 253 267 IPR019775 -
Pvu9g2108 956 SMART WD40_4 51 90 IPR001680 GO:0005515
Pvu9g2108 956 SMART WD40_4 226 266 IPR001680 GO:0005515
Pvu9g2108 956 SMART WD40_4 177 223 IPR001680 GO:0005515
Pvu9g2108 956 SMART WD40_4 2 47 IPR001680 GO:0005515
Pvu9g2108 956 SMART WD40_4 268 307 IPR001680 GO:0005515
Pvu9g2108 956 SMART WD40_4 93 132 IPR001680 GO:0005515
Pvu9g2108 956 SMART WD40_4 135 174 IPR001680 GO:0005515
Pvu9g2108 956 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515
Pvu9g2108 956 Gene3D - 2 196 IPR015943 GO:0005515
Pvu9g2108 956 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Pvu9g2108 956 SUPERFAMILY WD40 repeat-like 19 307 IPR036322 GO:0005515
Pvu9g2108 956 Gene3D - 197 308 IPR015943 GO:0005515
Pvu9g2108 956 CDD WD40 22 310 - -
Pvu9g2108 956 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Pvu9g2108 956 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 931 - -
Pvu9g2108 956 MobiDBLite consensus disorder prediction 897 912 - -
Pvu9g2108 956 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 90 - -
Pvu9g2108 956 MobiDBLite consensus disorder prediction 355 371 - -
Pvu9g2108 956 Pfam Minichromosome loss protein, Mcl1, middle region 424 705 IPR022100 -
Pvu9g2108 956 MobiDBLite consensus disorder prediction 934 956 - -
Pvu9g2108 956 MobiDBLite consensus disorder prediction 337 371 - -
Pvu9g2108 956 MobiDBLite consensus disorder prediction 890 956 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2108 58 272 Miscellaneous Gene Families AT5G08390 23.502 2.31e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2108 K11274 - gmx:100818807 1577.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2108 9 30189242 30194406 Pvu9g2108 9 30189242 30194406 ECH