Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2106 ATGGCTTCTGTGTCACCACCAACTCTCTCATGGCATCACAGACTCCCCATTCATCACAGAAGCAGTTGGACATGGAACCACAACAAAAGCAACTCTTTTCCTTCATTTATGCTTCCAAAATCTTCTCTTTCTTCTCCAACAACACGCAAACTTCACCATCTTTCTCCCACCCAAACAAACAACGCACACCAACCCTTTCTGCAACGCCTACACGATCTCTGCGACTCCGGGAACCTCAACGAAGCCCTCAACTTGCTCCACTCGCAGTCCCAAAACGGCGTCGGTTCCTCTTCAGACATTATAAAAGAAGCCATTGGACTCTTACTACGAGCCTGTGCGCACCACAAGGATGTCGAGATCGGGCGAAAGCTCCACGCTATGGTGTCGGCGTCGCATCGGTTCCACAACGACGTCGTTCTGAACACCCGCATTGTTTCCATGTACGCCGCGTGTGGGTCCCCCTCGGACTCTCGCTCCGCCTTCGACGCCGCGAAGGAAAAGGACCTGTTCCTCTACAACGCGCTTCTCAGCAGCTACGCGCGTAACGCGCTTTTCCGCGACGCGATTTTGCTGTTCCTCGACTTGCTCTACGCGACGGAGCTCGTGCCCGACAACTTCACGCTCCCCTGCGTGGTTAAGGCCTGCGCCGGCGTCGCGGACGCGGGACTCGGCGAAGCGGTTCACGCGCTGGCTTTGAAGTTGGGTCTTTTCTCTGACGTTTTTGTGGGGAACGCGCTTATTGCCATGTACGGGAAATGCGGGCTCGTAGAGAGTGCCGTCAAGGTGTTTGAAACTATGCCAAAGAGAAACTTGGTGACATGGAACTCGATGATGTACGCGTGTTCTGAGAATGGGGGTTTTGAGGAGTGTTGCGGTGTTTTTAAGGGACTGTTAAGTGAGGAAGAAGGTTTGGTACCTGATATTGCTACGATGGTGACGGTGATTCCTGCGTGCGCTACTCTAGGTGAAGTGGGAATGGGAATGGTTCTTCATGGTTTGGCTTTTAAACTTGGCATTAGTGAGGAAGTGACGGTGAATAATTGCCTTGTTGACATGTATTCGAAATGCGGTTACATGAGGGAGGCGAGAGTTTTGTTTGATATGAATGGTGGGAGGAATGTTGTTTCTTGGAATACCATGATTGGTGGATATTCCAAGGTAGGAGATTTTCGTGGAGTGTTTGTGCTGCTACGAGAGATGCTGAAAGAAGAGAAGGTGAAGGTGAATGAGGTGACGGTGTTAAACGTTCTGCCAGCTTGTTCGGATGAGCTGGTGACCTTGAAAGAACTTCATGGTTATGCTCTTAGGCGAGGATTTCAGATTGATGAATTGGTAGCCAATGCTTTTGTTGCTGCCTATGCGAGGTGCAGTTTGCTGGATTGCGCTGAGCATGTCTTCTGTGGTATGGAAGAGAAAACGGTGAGCACCTGGAATGCACTGATTGGTGCCCACGCACAAAATGGCTTTCCCAGAAAGGCTTTAGATTTGTATCTTGTGATGAGGGATTCTGGGTTGAATCCTGATCGGTTTACTATAGGTAGCCTTCTTTTAGCTTGTGCGCACTTGAAATTCCTTCGTCTTGGCAAAGAGATTCATGGTTTTATGATGCGTAATGGTTTAGAGCTGGATAAATTTCTTGGGATATCGTTGTTGTCACTTTATATTCAATGTGGTAGTATATTACGAGCAAAGTTAATTTTTGATAAGATGGAAAACAAGAGTTTAGTATGCTGGAATGCCATGATTTCTGGCTTTTCGCAGAATGAACTTCCTTGTGAGGCTCTTGATACATTTCAACAAATGCTCTCAAGTGGAATTGAGCCACAAGAGATTGCTGTAATGTGTGTTCTGAGCGCTTGTTCGCAGGTTTCATCATTGCGGCTTGGAAAAGAAGTTCACTCCTTTGCACTGAAAGCTCATTTATCTGACAATAACTTTGTTATTTGTGCATTGATAGACATGTATGCTAAATGTGGATGTATGGAACATTCTCAGAACATTTTTGATAGGGTAAATAACAAGGATGAAGCAGTATGGAATGCTATGATTGCAGGATATGGGATTCATGGGAATGGACCGAAGGCTGTTGAGCTGTTTGAATTAATGCAAAATAATGGCTGCAGGCCAGATTCTTTTACGTTTATGGGAGTGTTAATGGCCTGCAACCATGCTGGCATAGTGACAGAAGGATTAAAATATCTTGGTCAGATGCAGAGCTTGTATGGTGTAAAGCCAAAGTTAGAACATTATGCATGCGTGATCGATATGCTTGGTCGAGCAGGGCAGTTGAAAGAAGCTTTAAAGTTGGTAAATGAGATGCCAGATGAACCAGATTCAGGTATATGGAGTTCTTTACTCAGTTCCTGTAGGAATTATGGGGATTTTGATATTGGAGAGGAAGTTTCCAAAAAGTTATTAGAATTGGAACCAGATAAAGTTGAGAATTATGTATTGCTATCAAACTTATATGCTGGATTAGGAAAATGGGATGAGGTGAGAAAGGTACGGCAGAGAATGAAGGAGATTGGTCTTCATAAAGACGCAGGCTGCAGTTGGATTGAAATAGGAGGAAAGGTTTATAGATTTCTTGTCAGTGATGGATCACTTTTGGAATCAAAAAAGATTCAGCAAACTTGGAATAAATTGGAGAAAAAAATAAGCAAAGTTGGATATAAACCCGACACAAGTTGTGTGCTTCATGAATTGGAAGAAGAGGAAAAGATTAAGATACTGAAGAGACATAGCGAGAAGCTTGCAATTTCTTTTGGGCTGTTAAATACGGCTAAAGGTACAACATTGAGGATTTGCAAAAATTTACGCATATGTGTAGACTGTCACAATGCAATCAAGTTAGTATCAAAAGTTGTTGAAAGGGATATTGTTGTAAGGGACAACAAGCGGTTTCATCATTTCAAAAACGGATTTTGTACTTGTGGAGATTACTGGTAG 2949 0.4439 MASVSPPTLSWHHRLPIHHRSSWTWNHNKSNSFPSFMLPKSSLSSPTTRKLHHLSPTQTNNAHQPFLQRLHDLCDSGNLNEALNLLHSQSQNGVGSSSDIIKEAIGLLLRACAHHKDVEIGRKLHAMVSASHRFHNDVVLNTRIVSMYAACGSPSDSRSAFDAAKEKDLFLYNALLSSYARNALFRDAILLFLDLLYATELVPDNFTLPCVVKACAGVADAGLGEAVHALALKLGLFSDVFVGNALIAMYGKCGLVESAVKVFETMPKRNLVTWNSMMYACSENGGFEECCGVFKGLLSEEEGLVPDIATMVTVIPACATLGEVGMGMVLHGLAFKLGISEEVTVNNCLVDMYSKCGYMREARVLFDMNGGRNVVSWNTMIGGYSKVGDFRGVFVLLREMLKEEKVKVNEVTVLNVLPACSDELVTLKELHGYALRRGFQIDELVANAFVAAYARCSLLDCAEHVFCGMEEKTVSTWNALIGAHAQNGFPRKALDLYLVMRDSGLNPDRFTIGSLLLACAHLKFLRLGKEIHGFMMRNGLELDKFLGISLLSLYIQCGSILRAKLIFDKMENKSLVCWNAMISGFSQNELPCEALDTFQQMLSSGIEPQEIAVMCVLSACSQVSSLRLGKEVHSFALKAHLSDNNFVICALIDMYAKCGCMEHSQNIFDRVNNKDEAVWNAMIAGYGIHGNGPKAVELFELMQNNGCRPDSFTFMGVLMACNHAGIVTEGLKYLGQMQSLYGVKPKLEHYACVIDMLGRAGQLKEALKLVNEMPDEPDSGIWSSLLSSCRNYGDFDIGEEVSKKLLELEPDKVENYVLLSNLYAGLGKWDEVRKVRQRMKEIGLHKDAGCSWIEIGGKVYRFLVSDGSLLESKKIQQTWNKLEKKISKVGYKPDTSCVLHELEEEEKIKILKRHSEKLAISFGLLNTAKGTTLRICKNLRICVDCHNAIKLVSKVVERDIVVRDNKRFHHFKNGFCTCGDYW* 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2106 982 Pfam DYW family of nucleic acid deaminases 890 982 IPR032867 GO:0008270
Pvu9g2106 982 Pfam E motif 792 854 IPR046848 -
Pvu9g2106 982 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Pvu9g2106 982 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 675 709 IPR002885 -
Pvu9g2106 982 TIGRFAM PPR: pentatricopeptide repeat domain 244 271 IPR002885 -
Pvu9g2106 982 TIGRFAM PPR: pentatricopeptide repeat domain 272 307 IPR002885 -
Pvu9g2106 982 TIGRFAM PPR: pentatricopeptide repeat domain 375 409 IPR002885 -
Pvu9g2106 982 TIGRFAM PPR: pentatricopeptide repeat domain 750 774 IPR002885 -
Pvu9g2106 982 TIGRFAM PPR: pentatricopeptide repeat domain 576 609 IPR002885 -
Pvu9g2106 982 TIGRFAM PPR: pentatricopeptide repeat domain 678 711 IPR002885 -
Pvu9g2106 982 TIGRFAM PPR: pentatricopeptide repeat domain 476 508 IPR002885 -
Pvu9g2106 982 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 76 168 - -
Pvu9g2106 982 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 423 970 - -
Pvu9g2106 982 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 138 323 - -
Pvu9g2106 982 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 317 421 - -
Pvu9g2106 982 Gene3D Tetratricopeptide repeat domain 646 887 IPR011990 GO:0005515
Pvu9g2106 982 Gene3D Tetratricopeptide repeat domain 523 645 IPR011990 GO:0005515
Pvu9g2106 982 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Pvu9g2106 982 SUPERFAMILY TPR-like 759 842 IPR011990 GO:0005515
Pvu9g2106 982 Pfam PPR repeat family 473 520 IPR002885 -
Pvu9g2106 982 Pfam PPR repeat family 372 419 IPR002885 -
Pvu9g2106 982 Pfam PPR repeat family 675 721 IPR002885 -
Pvu9g2106 982 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 203 IPR002885 -
Pvu9g2106 982 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 574 608 IPR002885 -
Pvu9g2106 982 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 76 168 - -
Pvu9g2106 982 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 317 421 - -
Pvu9g2106 982 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 138 323 - -
Pvu9g2106 982 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 423 970 - -
Pvu9g2106 982 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 473 507 IPR002885 -
Pvu9g2106 982 Gene3D Tetratricopeptide repeat domain 427 522 IPR011990 GO:0005515
Pvu9g2106 982 Gene3D Tetratricopeptide repeat domain 329 426 IPR011990 GO:0005515
Pvu9g2106 982 Gene3D Tetratricopeptide repeat domain 95 220 IPR011990 GO:0005515
Pvu9g2106 982 Gene3D Tetratricopeptide repeat domain 221 328 IPR011990 GO:0005515
Pvu9g2106 982 Pfam PPR repeat 244 270 IPR002885 -
Pvu9g2106 982 Pfam PPR repeat 347 367 IPR002885 -
Pvu9g2106 982 Pfam PPR repeat 272 298 IPR002885 -
Pvu9g2106 982 Pfam PPR repeat 171 194 IPR002885 -
Pvu9g2106 982 Pfam PPR repeat 576 606 IPR002885 -
Pvu9g2106 982 Pfam PPR repeat 650 670 IPR002885 -
Pvu9g2106 982 Pfam PPR repeat 750 775 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2106 Pvu-Chr9 30181715 30185025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2106 193 982 Glycoside Hydrolase AT3G49170 35.891 5.90e-163 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2106 - - gmx:100779971 1614.36