Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2094 ATGGATAGCAGTAGCTCGGAACAGGCCGTGCAAGATGGCAAACTCTACAGAAACCTCAATTCTCTCATCGTCGCTCATCTTCGGGACAACAATCTCACCCAGGCTGCAAGTGTTGTTGCTTCAGCAACCATGACTCCACTGAATGTGGAAGCCCCACCTAACAGGCTTCTCGACCTGGTTGCTAAGGGTCTTGCAGCGGAAAAGGGCGACATCACAAGAGGCACTCATTTCTCTGCCTCACTGCCCTTGCCTCACACTGCAGCTATTGATTTCAGCACTGCGTCTGATATGAAAGGTTCCTCGAAGAGCTTCCCGAAGCTTGAAACGCGACACCTTTCGGAACACAAGAATATTGCCAGATGTGCTAGATTTAGTGCTGATGGAAGATTTGTTGCCACTGGAAGTGCCGATACATCAATAAAGCTATTTGAGGTTTCGAAGATCAAGCAGATGTTGCTGCCAGAGGCAAAGGATGGTCCTGTGCGGCCTGTCATTCGAACATATTATGATCATATACAACCAATAAACGATCTGGATTTTCATCCACAAGGTACTATCCTGATTTCAGGAGCCAAAGATCAAACAATAAAGTTTTTTGATATTTCAAAAACGAATGCAAAGAGAGCATACAGGGTTATCCAGGACACACACAATGTTCGATCTGTATCTTTCCATCCTTCTGGAGACTTTCTGCTGGCAGGAACTGATCATGCAATTCCACATTTGTATGATATAAATACCTTTCAGTGTTATCTGTCATCAAATGTCCCAGAGACTAGCCCCAATGGAGCCATAAACCAGGTCAGATATTCTAGTACAGGCGCCATGTATGTTACAGCATCTAAAGATGGTGCTGTTAGGTTATGGGATGGTATCACTGCCAATTGTGTGCGGTCAATAACTGCCGCCCACGGAACAGCTGAGGCTACCAGTGCAATTTTTACCAAAGATCAAAGGTTTGTTCTCTCCTGCGGGAAGGATTCTACCATAAAGCTTTGGGAAGTTGGCTCTGGAAGATTAGTCAGACAATATCTTGGAGCTATGCATACTCAGCTAAGGTGCCAGGCTATTTTTAATCAGACAGAAGAATTTATTATATTCATAGATGAACTGAGCAACGAGATCATTATCTGGGATGCAATGACAACAGAAAAAGTTGCGAAGTGGCCTTCTAATCATGTTGGTGCACCCCGCTGGCTTGAACACTCACCAATTGAGTCAGCTTTTATTTCCTGTGGAACTGATAGGTCAGTTCGGTTCTGGAAGGAAACTGTATAA 1278 0.4444 MDSSSSEQAVQDGKLYRNLNSLIVAHLRDNNLTQAASVVASATMTPLNVEAPPNRLLDLVAKGLAAEKGDITRGTHFSASLPLPHTAAIDFSTASDMKGSSKSFPKLETRHLSEHKNIARCARFSADGRFVATGSADTSIKLFEVSKIKQMLLPEAKDGPVRPVIRTYYDHIQPINDLDFHPQGTILISGAKDQTIKFFDISKTNAKRAYRVIQDTHNVRSVSFHPSGDFLLAGTDHAIPHLYDINTFQCYLSSNVPETSPNGAINQVRYSSTGAMYVTASKDGAVRLWDGITANCVRSITAAHGTAEATSAIFTKDQRFVLSCGKDSTIKLWEVGSGRLVRQYLGAMHTQLRCQAIFNQTEEFIIFIDELSNEIIIWDAMTTEKVAKWPSNHVGAPRWLEHSPIESAFISCGTDRSVRFWKETV* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2094 425 ProSitePatterns Trp-Asp (WD) repeats signature. 321 335 IPR019775 -
Pvu9g2094 425 Coils Coil 418 425 - -
Pvu9g2094 425 Pfam WD domain, G-beta repeat 295 333 IPR001680 GO:0005515
Pvu9g2094 425 Pfam WD domain, G-beta repeat 263 290 IPR001680 GO:0005515
Pvu9g2094 425 Pfam WD domain, G-beta repeat 165 200 IPR001680 GO:0005515
Pvu9g2094 425 Pfam WD domain, G-beta repeat 109 143 IPR001680 GO:0005515
Pvu9g2094 425 Pfam WD domain, G-beta repeat 216 239 IPR001680 GO:0005515
Pvu9g2094 425 SUPERFAMILY WD40 repeat-like 104 422 IPR036322 GO:0005515
Pvu9g2094 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 258 290 - -
Pvu9g2094 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 258 299 IPR001680 GO:0005515
Pvu9g2094 425 SMART WD40_4 206 244 IPR001680 GO:0005515
Pvu9g2094 425 SMART WD40_4 247 290 IPR001680 GO:0005515
Pvu9g2094 425 SMART WD40_4 105 144 IPR001680 GO:0005515
Pvu9g2094 425 SMART WD40_4 161 200 IPR001680 GO:0005515
Pvu9g2094 425 SMART WD40_4 293 334 IPR001680 GO:0005515
Pvu9g2094 425 SMART WD40_4 382 422 IPR001680 GO:0005515
Pvu9g2094 425 Gene3D - 94 424 IPR015943 GO:0005515
Pvu9g2094 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 112 153 IPR001680 GO:0005515
Pvu9g2094 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 168 209 IPR001680 GO:0005515
Pvu9g2094 425 CDD WD40 108 422 - -
Pvu9g2094 425 ProSiteProfiles Trp-Asp (WD) repeats profile. 314 343 IPR001680 GO:0005515
Pvu9g2094 425 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 168 202 - -
Pvu9g2094 425 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 6 424 IPR044633 GO:0005848|GO:0031124
Pvu9g2094 425 PRINTS G protein beta WD-40 repeat signature 187 201 IPR020472 -
Pvu9g2094 425 PRINTS G protein beta WD-40 repeat signature 277 291 IPR020472 -
Pvu9g2094 425 PRINTS G protein beta WD-40 repeat signature 321 335 IPR020472 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2094 165 421 Miscellaneous Gene Families AT5G08390 20.077 1.30e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2094 K14406 - gmx:100809908 811.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g2094 9 30034732 30039787 Pvu9g2094 9 30034732 30039787 ECH