Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2090 ATGGTGAGACACCCTTTATCCAAGAGAGCCAACAAATACCTCCGAAAATTCAGGAAATGGCCACACTCTCCTTATAAGACCTCATGGCACCACAACTTTGGTGAACAACAAGCTATGCATAAGCTCAAACAAGCAACCCTTGAAATGGGTTGTCCCCAAACACCCAACCTTCCCCACCCTTTTCTTCTCTCCACTCTCATTGACTCATTCAAATCTTACAGCTGTGACCCAACTCCAAAAGCTTACTACTTTCTCATTAAAACCTTAACCTGCACCTCCCAGTTTCAGGACATTCCTCCTGTCCTTGACCACCTTGAACACTTGGAGAAGTTTGAAACTCCAGAGTTTAACCTTGTATACCTTATTAGGTTCTATGGTCTCTCTGACAAGGTCCAAGATGCCGTGGATTTGTTTCTCAGAATCCCCAGGTTCAGGTGCACACCAACTGTTTGCTCATTGAACTTGGTTCTCTCGCTGCTTTGTAGGAAGAGAGAGTGTCTCAAAATGGTTCCTGAGATCTTACTGAAGAGCCAGCATATGAATATTCGCGTTGAGGAATCGACATTTCAGGTTTTGATCAAGGCCTTGTGTAGAATTAAGAGGGTGGGTTATGCCATTAAGATGCTGAATTATATGATAGAAGGTGGGTATGGTTTGGATGAGACAATGTGTTCTTTGATAATATCATCATTGTGTGAACAAGAGGATATGACCAGTGTTGAGGCTTTGGTTATTTGGAGGGATATGAGGAAACTAGGATTTTGTCCTGGGATCATGGATTATACCAACATGATTAGGTTCTTGGTGAAGGAAGGGAAGGGTATGGATGCTTTGGATATTCTTAACCAGCAGAAAAAAGATGGAATTAAACCAGATGTTGTTTGTTATACTATGGTCTTGAGTGGGATTATAGCAGAAGGGGAATATGTGAAGTTAGAAGAACTATTTGATGAAATACTTGTATTTGGACTCGTTCCTGATGTTTATACTTATAATGTGTATATAAATGGTTTGTGTAAGCAGAATAATGTAGACGAGGCCCTTAAAATTGTTGCTTCTATGGAAGAGTTAGAATGCAAACCAAATGTGGTTACTTGCAATATTTTATTGGGTGCGTTGTGTGTAGCAGGGGATTTACGTAAGGCAAGGGGGGTAATGAAGGAGATGGGGTGGAAGGGTGTTAGGCTCGACTTGCATTCATACAGGATAATGCTTGATGGTTTGGTTGGGAAGGGTGAGATTGGTGAAGCATGCTTTTTGTTGGAGGAAATGTTGGAGAAGAGTTTCTTTCCTAGATCTTCAACATTTGATCATATCATATTTCAGATGTGCCAAAAGGGCTTGATTGTTGAAGCAATAGAATTGACCAAGAAAATTGTTGCAAAAAGTTTTGTTCCTGGGGCCAGGGCTTGGGAAGCACTTCTAAAATCAGGATCTAAACTTGGGTTTTCAGAAACCACATTTTCTGGCTTGTTGGGCCAAAAAAATAATCTCAGTTATCAAACTGGCTCAGGTAATAGATCTGTTATTGAAAATATTTAG 1542 0.4053 MVRHPLSKRANKYLRKFRKWPHSPYKTSWHHNFGEQQAMHKLKQATLEMGCPQTPNLPHPFLLSTLIDSFKSYSCDPTPKAYYFLIKTLTCTSQFQDIPPVLDHLEHLEKFETPEFNLVYLIRFYGLSDKVQDAVDLFLRIPRFRCTPTVCSLNLVLSLLCRKRECLKMVPEILLKSQHMNIRVEESTFQVLIKALCRIKRVGYAIKMLNYMIEGGYGLDETMCSLIISSLCEQEDMTSVEALVIWRDMRKLGFCPGIMDYTNMIRFLVKEGKGMDALDILNQQKKDGIKPDVVCYTMVLSGIIAEGEYVKLEELFDEILVFGLVPDVYTYNVYINGLCKQNNVDEALKIVASMEELECKPNVVTCNILLGALCVAGDLRKARGVMKEMGWKGVRLDLHSYRIMLDGLVGKGEIGEACFLLEEMLEKSFFPRSSTFDHIIFQMCQKGLIVEAIELTKKIVAKSFVPGARAWEALLKSGSKLGFSETTFSGLLGQKNNLSYQTGSGNRSVIENI* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2090 513 Pfam PPR repeat family 326 374 IPR002885 -
Pvu9g2090 513 Gene3D Tetratricopeptide repeat domain 64 239 IPR011990 GO:0005515
Pvu9g2090 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Pvu9g2090 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Pvu9g2090 513 Pfam PPR repeat 188 216 IPR002885 -
Pvu9g2090 513 Pfam PPR repeat 400 428 IPR002885 -
Pvu9g2090 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Pvu9g2090 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 185 219 IPR002885 -
Pvu9g2090 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 256 IPR002885 -
Pvu9g2090 513 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 5 489 - -
Pvu9g2090 513 Gene3D Tetratricopeptide repeat domain 392 487 IPR011990 GO:0005515
Pvu9g2090 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Pvu9g2090 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Pvu9g2090 513 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 5 489 - -
Pvu9g2090 513 TIGRFAM PPR: pentatricopeptide repeat domain 294 328 IPR002885 -
Pvu9g2090 513 TIGRFAM PPR: pentatricopeptide repeat domain 329 363 IPR002885 -
Pvu9g2090 513 TIGRFAM PPR: pentatricopeptide repeat domain 261 293 IPR002885 -
Pvu9g2090 513 TIGRFAM PPR: pentatricopeptide repeat domain 400 431 IPR002885 -
Pvu9g2090 513 TIGRFAM PPR: pentatricopeptide repeat domain 188 220 IPR002885 -
Pvu9g2090 513 TIGRFAM PPR: pentatricopeptide repeat domain 364 389 IPR002885 -
Pvu9g2090 513 Pfam Pentatricopeptide repeat domain 245 301 IPR002885 -
Pvu9g2090 513 Gene3D Tetratricopeptide repeat domain 240 320 IPR011990 GO:0005515
Pvu9g2090 513 Gene3D Tetratricopeptide repeat domain 321 391 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2090 Pvu-Chr9 29966350 29967891 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2090 183 488 Glycosyltransferase AT1G05670 25.407 3.70e-19 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2090 - - pvu:PHAVU_008G089500g 979.163