Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2063 ATGGCTTTTCTCCCTCCCTCAGTCCCCAACCCTCCGCTCCATCTTCCTCATTCCAAACCCCAAACCCTCACAAACCTCACGCCGAAGCAATTCTCTCACAACCACTTCTCTTCGCTCTGCAAAGATGGCCGAATCCGCGAAGCCGTAGACTGCCTCTCTGAAATGCAATGGCGAAACCTCCCGGCGGGACCCGACGTTTACGGAACGATCCTTCAGGGCTGCGTGTACGAGAGAGCCCTACCGCTCGGCAGCCAAATCCACGGCCACCTCATAAAAAAAGGTCCTTCCTTCTCCCAAAACGAGTTCGTCGAATCCAAGCTAATCATTCTCTACGCAAAATGCGGCGCATCCGACGTGGCAACGCGCCTCTTCCGCGATTCGCAAAGCCAGAACGTCTTCTCCTGGGCCGCCATTATCGGGTTGCACACGCGAACGGGCCGTTGCCAAGAAGCGCTTTTGAGTTACATCGAAATGCAGAACCAGGGGTTCTTACCCGACAACTTCGTTGTCCCCAATGCTTTGAAGGCTTGTGGGTTTCTTCGGTGGGTTGGATTTGGTAAAGGGGTTCACGCATTCGTTGTGAAGACAATGGGGTTCAGTGAATGTGTTTATGTTGCTACTAGCCTTGTGGACATGTACGGGAAGTGTGGAGCTTTGGAGGATGCGGAGAGGGTGTTTGATGGAATGGCTGAGAGAAACGACGTCGCTTGGAACTCCATGATTGTGACCTACGCGCAAAACGGAATGAATGAGGAGGCGATTGGGATGTTTCGGGAGATGAGGTTGCAGGGAGTAGAACTAACTCCCGTTGCTTTGTCGGGTTTTTTTACGGCATGTGCGAATATGGAGGCCGTTGGAGAAGGACGACAAGGGCATGGCCTTGCTGTTGTGAGAGGGTTGGAGTTGGATAACGTTTTGGGGAGTTCAATTATGAACTTCTATTTCAAGGTTGGTTTCGTTGAGGAAGCCGAGGTGGTTTTTGGAGACATGGTGATGAGAGATGTGGTAGCCTGGAATTTGGTTGTGTCGGGTTACGTGCAGTATGGGATGGTTGGGAAGGCGCTTGAGATGTGTCGTATTATGAGGGAACAGAATTTGAGGTTTGACTGTGTGACATTGTCTTCTTTGTTGGCTGTTGCTGCTGATACAAGAGATGCTGGACTGGGCATGAAGGCACACGCATATTGTGTTAAGAATGATTTTGAGTATGATGTGGTTGTCTCGAGTGGAATCATTGATATGTACGCGAAGTGTGGGAGGATGGATTGTGCAAGAAGAATTTTCAGCTCTACCAGAAAGAAGGACATTGTGTTGTGGAATACGATGTTGGCTGCTTGTGCTGAGCAGGGTCTGAGTGGGGAGGCCTTGAAGTTGTTCTTTCAATTGCAGCTGGAGAGCGTGCCTCCAAATGTGGTTTCTTGGAATTCTGTGATTTTTGGTTTCTTTAAGAATGGTCAGGTTGCTGAGGCTAGAAACATGTTTGCAGAAATGTGCTCCTCTGGTGTTACGCCTAATTTGATCACGTGGACGACGGTGATGTCTGGTTTGGCTCAGAATGGTCTTGGTTATGATGCCATGATGGTTTTCAGGGAGATGCAGGATATGGGAATCAGTCCCAATAACATGAGCATAACTTGTGCGCTCTCAGCTTGCACCAGCATGGCATTATTGAAATATGGAAGGGCAATTCATGGGTATATCATGAGGCATTATATGTTTCAATCTCTTAATATCGCAACCACTATAATGGATATGTATGCTAAATGTGGAGCTTTGAATGATGCTAAGCATGTTTTCAGTTTGTGTTCTACAAAGGAATTGCCTGTGTACAATGCAATGATATCTGCATATGCATCTCATGGTCAAGCTAGAGAAGCTCTTGCGCTTTTTAAACAGTTGGGAAAAAAAGGAATTGTGCCAGATCATATAACCCTTACTAGTGTGCTGTCAGCATGCAGCCACGGGGGTTTGGTGAAGGAGGGCATCGAGATTTTCAAGTATATGGTCTCTGATCTCCAGATGTCACCGAGTCAGGAACATTATGGTTGTTTGATCAAACTTTTGGCCGGAGATGGCCAGTTAGATGAAGCTCTTGAGACTATTTTTACAATGCCAAGCCATCCTGATGAACATATATTAGGATCTCTGCTTGCGGCGTGTGGACAAAATCATGATATTGAACTAGCTGATTATATAGCAAAATGGTTGTTGAAACTGGATCCGCATAATTCAGGGAATTATGTGGCTCTTTCAAATGTATATGCAACTGTTGGAAAATGGGATGAAGTGTCAAATATAAGGAGATTCATGAAAGAAAAGGGTCTACGAAAGATTCCTGGGTGTAGCTGGATTCAAGTTGGACAAGAACTACATTATTTTATTGCTGGCGATAGATCACACCCTAAAACCGAAGAGATATATGTTACATTGGATTTGTTGGGATCTGAAATGCATTAA 2457 0.4624 MAFLPPSVPNPPLHLPHSKPQTLTNLTPKQFSHNHFSSLCKDGRIREAVDCLSEMQWRNLPAGPDVYGTILQGCVYERALPLGSQIHGHLIKKGPSFSQNEFVESKLIILYAKCGASDVATRLFRDSQSQNVFSWAAIIGLHTRTGRCQEALLSYIEMQNQGFLPDNFVVPNALKACGFLRWVGFGKGVHAFVVKTMGFSECVYVATSLVDMYGKCGALEDAERVFDGMAERNDVAWNSMIVTYAQNGMNEEAIGMFREMRLQGVELTPVALSGFFTACANMEAVGEGRQGHGLAVVRGLELDNVLGSSIMNFYFKVGFVEEAEVVFGDMVMRDVVAWNLVVSGYVQYGMVGKALEMCRIMREQNLRFDCVTLSSLLAVAADTRDAGLGMKAHAYCVKNDFEYDVVVSSGIIDMYAKCGRMDCARRIFSSTRKKDIVLWNTMLAACAEQGLSGEALKLFFQLQLESVPPNVVSWNSVIFGFFKNGQVAEARNMFAEMCSSGVTPNLITWTTVMSGLAQNGLGYDAMMVFREMQDMGISPNNMSITCALSACTSMALLKYGRAIHGYIMRHYMFQSLNIATTIMDMYAKCGALNDAKHVFSLCSTKELPVYNAMISAYASHGQAREALALFKQLGKKGIVPDHITLTSVLSACSHGGLVKEGIEIFKYMVSDLQMSPSQEHYGCLIKLLAGDGQLDEALETIFTMPSHPDEHILGSLLAACGQNHDIELADYIAKWLLKLDPHNSGNYVALSNVYATVGKWDEVSNIRRFMKEKGLRKIPGCSWIQVGQELHYFIAGDRSHPKTEEIYVTLDLLGSEMH* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2063 818 TIGRFAM PPR: pentatricopeptide repeat domain 609 641 IPR002885 -
Pvu9g2063 818 TIGRFAM PPR: pentatricopeptide repeat domain 437 471 IPR002885 -
Pvu9g2063 818 TIGRFAM PPR: pentatricopeptide repeat domain 336 369 IPR002885 -
Pvu9g2063 818 TIGRFAM PPR: pentatricopeptide repeat domain 472 505 IPR002885 -
Pvu9g2063 818 TIGRFAM PPR: pentatricopeptide repeat domain 507 540 IPR002885 -
Pvu9g2063 818 TIGRFAM PPR: pentatricopeptide repeat domain 235 268 IPR002885 -
Pvu9g2063 818 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 606 640 IPR002885 -
Pvu9g2063 818 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Pvu9g2063 818 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Pvu9g2063 818 Gene3D Tetratricopeptide repeat domain 188 290 IPR011990 GO:0005515
Pvu9g2063 818 Gene3D Tetratricopeptide repeat domain 292 392 IPR011990 GO:0005515
Pvu9g2063 818 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 131 165 IPR002885 -
Pvu9g2063 818 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 435 469 IPR002885 -
Pvu9g2063 818 Pfam PPR repeat 37 59 IPR002885 -
Pvu9g2063 818 Pfam PPR repeat 308 334 IPR002885 -
Pvu9g2063 818 Pfam PPR repeat 410 434 IPR002885 -
Pvu9g2063 818 Pfam PPR repeat 336 365 IPR002885 -
Pvu9g2063 818 Pfam PPR repeat 235 265 IPR002885 -
Pvu9g2063 818 Pfam PPR repeat 133 163 IPR002885 -
Pvu9g2063 818 Pfam PPR repeat 437 463 IPR002885 -
Pvu9g2063 818 Pfam PPR repeat 207 233 IPR002885 -
Pvu9g2063 818 PANTHER OS07G0578800 PROTEIN-RELATED 332 380 IPR045215 GO:0003723|GO:0009451
Pvu9g2063 818 PANTHER OS07G0578800 PROTEIN-RELATED 29 332 IPR045215 GO:0003723|GO:0009451
Pvu9g2063 818 PANTHER OS07G0578800 PROTEIN-RELATED 515 805 IPR045215 GO:0003723|GO:0009451
Pvu9g2063 818 PANTHER OS07G0578800 PROTEIN-RELATED 353 520 IPR045215 GO:0003723|GO:0009451
Pvu9g2063 818 Pfam PPR repeat family 609 653 IPR002885 -
Pvu9g2063 818 Pfam PPR repeat family 469 517 IPR002885 -
Pvu9g2063 818 Pfam E motif 725 785 IPR046848 -
Pvu9g2063 818 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 332 380 - -
Pvu9g2063 818 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 29 332 - -
Pvu9g2063 818 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 353 520 - -
Pvu9g2063 818 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 515 805 - -
Pvu9g2063 818 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 470 504 IPR002885 -
Pvu9g2063 818 Gene3D Tetratricopeptide repeat domain 408 580 IPR011990 GO:0005515
Pvu9g2063 818 Gene3D Tetratricopeptide repeat domain 32 183 IPR011990 GO:0005515
Pvu9g2063 818 Gene3D Tetratricopeptide repeat domain 581 793 IPR011990 GO:0005515
Pvu9g2063 818 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 505 539 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2063 Pvu-Chr9 29621868 29624954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2063 138 817 Glycoside Hydrolase AT3G49170 29.477 3.07e-100 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2063 - - gmx:100806010 1311.59