Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2043 ATGTATTTGCATGTCTCAAAACAATTGAATTCCATGCATCTGTCTAATCACTACTGCGAGTTGCTCAAACATTGCCGCGACACAAAGAAGGTTCACTGCAACATAATCAAGGCCTTTCAAAATCCCGAAACCTTTCTGCTAAACAACTTAGTCAATGCCTATGCTAAGCTTGGAAGCATTATTTATGCCCGCCGGGTGTTCGATCAAATGCCCCAACGGAATCTATACTCTTGGAACACTCTTCTCTCATCGTATTCAAAATTGGGTCGTCTTCCTGAGATGAAACGCGTGTTTGATGCAATGCCAGCCCGAGATATGGTCTCGTGGAATTCCCTTATTTCGGGCTATGCTAGTCGTGGTTTTCTTGTTCAATCGGTGAAGGCTTATAATATGATGTTATATGATGGGTTATTTAATTTGACACGGATTTCGTTATCCACCATGCTTATACTTGCCTCCAATCAGAATTATGTTTGTTTGGGTAGGCAGATTCATGGGCATGTGGTGAAATTTGGTTTCCAGTCCTATGTTTTTGTTGGGAGTCCTCTGGTGGATATGTACTCTAAAACGGGGCTTATATTTTGTGCAAGACAGGTTTTTGATGAGATGCCCCAGAAGAATGTGGTTATGTATAATACACTGATTGCAGGGCTTATGCGATGCGGAAGAATTGAGGATTCGCGGCAGTTGTTTTATGAAATGCGGGAAAAGGATTCCATTTCCTGGACAGCAATGATTGCGGGATTTACTCAGAATGGTTTTGACTTAGAAGCTATTGATTTATTGAGAGATATGAGATTAGAAAATCTTGATATGGATCAGTACACTTTTGGAAGCGTGTTAACTGCTTGCGGTGGTGTTGCGGCTTTGCAAGAAGGCAAGCAAGTTCATGCTTATATAATTAGGACGGATTACCAGAATAACATATTTGTTGGTAGCGCTCTTGTTGACATGTATTGTAAGTGTAAGAGTATAAAATCAGCTGAATCAGTTTTTAGGAAGATGACTTGCAAGAATGTTGTATCTTGGACTGCGATGTTGGTGGGTTATGGACAGAATGGTTACTGTGAAGAAGCTGTTAAAATATTTTGTGATATGCAAAAATATGGGATTGAACCAGATGATTTCACCCTTGGGAGTGTAATTAGCTCGTGTGCAAACCTTGCTAGCCTAGAAGAGGGCGCTCAGTTTCATGGCAGAGCTCTGGTTTCTGGCTTAATTTCTTTTATCACTGTTTCCAATGCTCTAGTTACATTATATGGTAAATGTGGAAGCATTGAAGACTCTCATAGACTTTTTAGTGAAATGATCTTCGTGGATGAAGTCTCATGGACTGCACTTGTTTCTGGTTATGCACAATTTGGTAAAGCCAATGAAACTTTAACGTTGTTTGAAAGGATGTTAGCCCATGGTTTCAAACCCGACAAGGTTACTTTTATTGGGGTTCTTTCAGCTTGCAGCAGAGCAGGACTAGTTGAGAAAGGAAATCAGATATTTGAGTCAATGATTAAGGAACATAGGATTATACCTATTCACGATCATTACACATGCATGATTGACCTCTTCAGCCGAGCTGGGAGGTTAGAAGAGGCAAGGAATTTTATAAATATGATGCCTTTCAGCCCTGACGCAATTGGTTGGGCATCCTTATTAAGTTCATGTAGATTCTATAGAAACATGGAAATTGGCAAGTGGGCAGCTGAATCTCTAATAAAATTAGAACCACATAACACTGCAAGTTACATCTTACTTTCGAGCATCTATGCTTCTAAAGGAAGATGGGAAGAAGTTTCCATTTTAAGAAAAGGGATGAGAGATAAGGGTCTGAGAAAAGAACCAGGATGTAGCTGGATCAAATATAAGAACCAAGTGCACATTTTTTCTGCTGATGATCGGTCTAACCCATTTTCTGATCAGATATATTCTGAGCTTGAAAAATTGAACTATAAAATGGTACAAGAGGGATATGTGCCTGATATGAATTCTGTTTTGCATGATGTTGAGGATTCAGAGAAAATAAAGATGCTTAATCACCATAGTGAAAAGCTTGCAATTGCATTTGGATTAATATTTATTCCTCCTGGTTTGCCCATACGAGTTGTTAAAAATTTAAGGGTCTGTGGGGATTGCCACAATGCAACTAAGTATATATCTAAGATCACCCAGAGGGAGATTCTTGTTAGAGATGCTGCCCGATTCCACTTGTTTAAAGATGGAACGTGTTCATGCGGAGACTTTTGGTGA 2244 0.3953 MYLHVSKQLNSMHLSNHYCELLKHCRDTKKVHCNIIKAFQNPETFLLNNLVNAYAKLGSIIYARRVFDQMPQRNLYSWNTLLSSYSKLGRLPEMKRVFDAMPARDMVSWNSLISGYASRGFLVQSVKAYNMMLYDGLFNLTRISLSTMLILASNQNYVCLGRQIHGHVVKFGFQSYVFVGSPLVDMYSKTGLIFCARQVFDEMPQKNVVMYNTLIAGLMRCGRIEDSRQLFYEMREKDSISWTAMIAGFTQNGFDLEAIDLLRDMRLENLDMDQYTFGSVLTACGGVAALQEGKQVHAYIIRTDYQNNIFVGSALVDMYCKCKSIKSAESVFRKMTCKNVVSWTAMLVGYGQNGYCEEAVKIFCDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHGRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMIFVDEVSWTALVSGYAQFGKANETLTLFERMLAHGFKPDKVTFIGVLSACSRAGLVEKGNQIFESMIKEHRIIPIHDHYTCMIDLFSRAGRLEEARNFINMMPFSPDAIGWASLLSSCRFYRNMEIGKWAAESLIKLEPHNTASYILLSSIYASKGRWEEVSILRKGMRDKGLRKEPGCSWIKYKNQVHIFSADDRSNPFSDQIYSELEKLNYKMVQEGYVPDMNSVLHDVEDSEKIKMLNHHSEKLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKYISKITQREILVRDAARFHLFKDGTCSCGDFW* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2043 747 Pfam DYW family of nucleic acid deaminases 655 747 IPR032867 GO:0008270
Pvu9g2043 747 Pfam PPR repeat family 440 487 IPR002885 -
Pvu9g2043 747 Pfam PPR repeat family 338 387 IPR002885 -
Pvu9g2043 747 Gene3D Tetratricopeptide repeat domain 494 686 IPR011990 GO:0005515
Pvu9g2043 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Pvu9g2043 747 PANTHER OS07G0578800 PROTEIN-RELATED 15 89 IPR045215 GO:0003723|GO:0009451
Pvu9g2043 747 PANTHER OS07G0578800 PROTEIN-RELATED 96 729 IPR045215 GO:0003723|GO:0009451
Pvu9g2043 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 475 510 IPR002885 -
Pvu9g2043 747 TIGRFAM PPR: pentatricopeptide repeat domain 209 238 IPR002885 -
Pvu9g2043 747 TIGRFAM PPR: pentatricopeptide repeat domain 341 374 IPR002885 -
Pvu9g2043 747 TIGRFAM PPR: pentatricopeptide repeat domain 515 538 IPR002885 -
Pvu9g2043 747 TIGRFAM PPR: pentatricopeptide repeat domain 76 106 IPR002885 -
Pvu9g2043 747 TIGRFAM PPR: pentatricopeptide repeat domain 442 475 IPR002885 -
Pvu9g2043 747 TIGRFAM PPR: pentatricopeptide repeat domain 477 505 IPR002885 -
Pvu9g2043 747 Pfam E motif 557 619 IPR046848 -
Pvu9g2043 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Pvu9g2043 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 440 474 IPR002885 -
Pvu9g2043 747 Pfam PPR repeat 514 538 IPR002885 -
Pvu9g2043 747 Pfam PPR repeat 76 104 IPR002885 -
Pvu9g2043 747 Pfam PPR repeat 240 269 IPR002885 -
Pvu9g2043 747 Pfam PPR repeat 183 208 IPR002885 -
Pvu9g2043 747 Pfam PPR repeat 209 237 IPR002885 -
Pvu9g2043 747 Pfam PPR repeat 48 74 IPR002885 -
Pvu9g2043 747 Pfam PPR repeat 414 437 IPR002885 -
Pvu9g2043 747 Pfam PPR repeat 107 136 IPR002885 -
Pvu9g2043 747 Gene3D Tetratricopeptide repeat domain 178 288 IPR011990 GO:0005515
Pvu9g2043 747 Gene3D Tetratricopeptide repeat domain 13 163 IPR011990 GO:0005515
Pvu9g2043 747 Gene3D Tetratricopeptide repeat domain 289 399 IPR011990 GO:0005515
Pvu9g2043 747 Gene3D Tetratricopeptide repeat domain 404 492 IPR011990 GO:0005515
Pvu9g2043 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 74 108 IPR002885 -
Pvu9g2043 747 PANTHER OS02G0106300 PROTEIN 96 729 - -
Pvu9g2043 747 PANTHER OS02G0106300 PROTEIN 15 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2043 Pvu-Chr9 29243154 29246024 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2043 96 747 Glycoside Hydrolase AT3G49170 37.082 2.59e-153 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2043 - - gmx:100807213 1384.01