Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2041 ATGAGCGTTGAGAAGGGGTTTCTCACAAGCGTGGCGCAAAAATGCAACACTCTAATCAAACTCAAGCAACTACACGCTCACATCCTCCGATGCCGCTACAACGACACGCCGTATGCCCTCGCCCCGCTTCTCTCCGTCGCAGCCATCTCCAACGACGCCTCCTTTTTCTCCTACGCTCGCTCCATCTTCCGCCACCTCCGCCACCGCAACACCTTCATGCACAACACCATGATCAGAGGCTACCTCCAAGCCCGTTTACCCCTCCCCGCTGTCTCCTGCTACTTGTCCATGCTCCGAAACGGGATTGCCGTTAACAACTACACATTCCCACCTTTGGTCAAGGCTTGCATTGCGCTTCTTCCTTCTTTCAAAGTTGTTGGCCGTTTGGTGCACGGCCACGTCGTTAAGTTCGGCTTCCGCGACGACCCTTACGTGCTGAGTGCGTTCATCGAGTTCTACTCTGTTTCTCGTGAGGTGGAACATGCACGGGTATTGTTTGATAAAACGACTAAGAAAGATGTGGTGTTGGGGACAGCGATGGTTGACGGTTATGGTAAAATGGGGAATGTGGACAAGGCTAGAGAAGTGTTTGAGCAAATGCCTGACAGAAACGCTGTGTCGTGGAGTGCCATGATAGCAGCTTATTCTCGAGTTAGTGACTTCAAGGAAGTGCTTGCTTTGTTTGCGGAGATGCAAAACGAGGGTACAAAGCCGAATGAGTCCGTCCTTGTCTCGGTCCTCACTGCGTGTGCTCATCTTGGTGCATTCGCACAGGGCCTGTGGGTGCATTCCTATGCCAAGAGATTCCAACTTGACTCCAATCCAATTTTGACAACGGCTTTGGTGGACATGTATTCCAAATGTGGAAGTGTAGAATCTGCTTTATCTGTTTTTCAGAGCATTGTCAATAAGGATGCCGGTGCATGGAATGCTATGATTTGTGGTGTTGCCTTGAATGGTGATGCAGAGAAATCGCTGGAGTTGTTTTACCAAATGGCTGCTTCTGGGACTAAGCCGAATGAGACTACATTTGTGGCTGTCCTCACTGCTTGCACTCATGCAAAGATGGTTCAGCAAGGCCTTTGGCTGTTTGAAGAAATGAGTAGCTCTTATGGAATTGCCCCAAAAATGGAGCATTATGCTTGTGTTGTTGACCTTCTGTCAAGAGCTGGCATGGTAGAGGAAGCTGAGAAATTTATGGAGGAGATGGGTGGACTTGCAGCCAGTGATGCTAACGTGTGGGGTGCTCTTCTAAATGCATGTAGAATTCATAAAAATATTCATGTTGGGAATAGAGTATGGAAAAAACTGCTTGATATGGGAATCGCTGACTGTGGTACTCACGTTCTTACTTACAATATATATAGAGAAGCTGGGTGGGAAGCAGAGGCAAAAAAAGTTAGAACTAGGATCGAAGAAATAGGGATGAGAAAGAAGCCCGGATGCAGCATAATAGAGGTGGATGATGAAGTTGAAGAGTTTCTTGCAGGTGATCATTCTCATCCACTAGCTCAGGAAATGTGTAGATTACTGGATTCCATTCTCAAGATGGGGACTTTAGAGAACTTCTGA 1572 0.4765 MSVEKGFLTSVAQKCNTLIKLKQLHAHILRCRYNDTPYALAPLLSVAAISNDASFFSYARSIFRHLRHRNTFMHNTMIRGYLQARLPLPAVSCYLSMLRNGIAVNNYTFPPLVKACIALLPSFKVVGRLVHGHVVKFGFRDDPYVLSAFIEFYSVSREVEHARVLFDKTTKKDVVLGTAMVDGYGKMGNVDKAREVFEQMPDRNAVSWSAMIAAYSRVSDFKEVLALFAEMQNEGTKPNESVLVSVLTACAHLGAFAQGLWVHSYAKRFQLDSNPILTTALVDMYSKCGSVESALSVFQSIVNKDAGAWNAMICGVALNGDAEKSLELFYQMAASGTKPNETTFVAVLTACTHAKMVQQGLWLFEEMSSSYGIAPKMEHYACVVDLLSRAGMVEEAEKFMEEMGGLAASDANVWGALLNACRIHKNIHVGNRVWKKLLDMGIADCGTHVLTYNIYREAGWEAEAKKVRTRIEEIGMRKKPGCSIIEVDDEVEEFLAGDHSHPLAQEMCRLLDSILKMGTLENF* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2041 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Pvu9g2041 523 Pfam E motif 424 486 IPR046848 -
Pvu9g2041 523 Pfam PPR repeat 178 203 IPR002885 -
Pvu9g2041 523 Pfam PPR repeat 73 102 IPR002885 -
Pvu9g2041 523 Pfam PPR repeat 279 303 IPR002885 -
Pvu9g2041 523 Pfam PPR repeat family 204 251 IPR002885 -
Pvu9g2041 523 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 8 486 - -
Pvu9g2041 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Pvu9g2041 523 PANTHER - 8 486 - -
Pvu9g2041 523 Pfam Pentacotripeptide-repeat region of PRORP 321 404 IPR033443 -
Pvu9g2041 523 Gene3D Tetratricopeptide repeat domain 258 493 IPR011990 GO:0005515
Pvu9g2041 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 203 IPR002885 -
Pvu9g2041 523 TIGRFAM PPR: pentatricopeptide repeat domain 380 403 IPR002885 -
Pvu9g2041 523 TIGRFAM PPR: pentatricopeptide repeat domain 309 341 IPR002885 -
Pvu9g2041 523 TIGRFAM PPR: pentatricopeptide repeat domain 73 105 IPR002885 -
Pvu9g2041 523 TIGRFAM PPR: pentatricopeptide repeat domain 206 240 IPR002885 -
Pvu9g2041 523 TIGRFAM PPR: pentatricopeptide repeat domain 178 203 IPR002885 -
Pvu9g2041 523 Gene3D Tetratricopeptide repeat domain 9 119 IPR011990 GO:0005515
Pvu9g2041 523 Gene3D Tetratricopeptide repeat domain 130 257 IPR011990 GO:0005515
Pvu9g2041 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 70 104 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2041 Pvu-Chr9 29231144 29232715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g2041 4 515 Glycoside Hydrolase AT3G49170 31.081 5.58e-73 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2041 - - gmx:100780299 913.294