Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g2011 ATGTTAGAGCAGTTACTGATATTTACAAGAGGAGGGTTAATCCTCTGGACATGTAAAGAACTTGGAAACGCTCTGAAAGGTTCCCCCATAGATACCTTGATTCGTTCCTGTCTTTTGGAGGAGCGATCCGGTGCGGCATCATACAATTATGATGCTCCTGGGGCTTCCTACACCCTCAAATGGACCTTCCACAATGAACTTGGCCTTGTTTTTGTGGCTGTGTACCAACGGATTCTTCACCTCTTGTATGTGGAAGATCTGCTTGCTATGGTGAAGCGTGAGTTTTCGCAGATCTATGATCCCAAAAGGACTGTTTACCCTGATTTTGATGAGACCTTTAGGCAGCTAAAGATGGAGGCTCTGGCCCGTGCTGAAGATTTGAAGCGGTCGAATCCAAATGCTGTTGCTGGGAATGCTAAGAAGCAGGCGCAGGGGAACAATAAGTTGGGATTCGAGGGAGGGAATAAGAAGAAGAGTGGTGGTGCGGCGAAGGATGGTGGTGGGGTAGACGGTGGTGACGATGGCAATGGACGGAGGTCTGAGAATGGGCACTCCAATGGAAATTTTGTTGTTGCTAAAGATTCTAACCATAGTAGTGATGTGAATGGTAGACAGAATGGAAGTCCCAATGTTGGGGCTTTTGATGTACATAAGCTTCAGAAGCTTAGGACCAAAGGTGGGAAGAAGGTAGTAGTAGATACGGCTGCAAAGGCCTCAAAGGCTGAGCCAAACAAAAAAGTCATAAAGAAAAATAGGGTGTGGAATGAAGCTGCTACTAAGGAAACAAAATTGGACTTTACTGATCATTCTGCTGAGGATGGGAACAGGAACATAGATTATGTGGTTGCAGATCAAGGTGAAAGTATGATGGATAAAGAAGAGATGATTAGCTCGGAAAGCGAGGAGGAAGAGGAGGAGGAGGAGAATGTGGGAAATAAGAGAAAGCCTGACTCCAAAAACAAGGGTTGGTTTTCATCCATGTTCCAGAGTATTGCAGGGAAGGCAAATTTGGAGAAATCGGACTTAGAACCAGCTTTGAAAGCTCTAAAGGATAGGCTCATGACCAAGAATGTGGCTGAGGAGATAGCTGAGAAACTCTGTGAATCAGTTGCAGCAAGCCTTGAAGGCAAAAAGCTGGCTTCATTTACAAGGATATCTTCAACAGTGCATGCGGCAATGGAAGAAGCTCTTGTTCGAATTTTAACTCCTAGACGTTCTATTGATATACTGAGGGATGTGCATGCTGCCAAAGAGCAAAGGAAACCATATGTTGTTGTATTTGTTGGTGTTAATGGTGTTGGAAAATCTACTAATCTAGCTAAGGTTGCTTATTGGCTTCTGCAGCACAAGGTCAGTGTCATGATGGCTGCCTGTGACACATTTCGATCAGGGGCTGTTGAACAGCTGCGGACCCATGCTCGGAGACTTCAGATACCTATATATGAGAAGGGGTACGAGAAAGATCCTGCCGTTGTTGCAAAAGAAGCAATTCAAGAAGCTTCGCAAAATGGTTCAGATGTGGTTCTTGTTGATACGGCTGGTCGTATGCAGGATAATGAACCACTTATGAGAGCACTGTCAAAACTCATCTACCTTAACAATCCAGATCTAGTTCTATTTGTTGGAGAAGCACTGGTTGGTAATGACGCAGTTGATCAGCTTTCAAAGTTCAATCAGAAATTAGCGGACCTCGCAACATCACCTAACCCAAGATTGATTGATGGAATCTTGCTCACCAAGTTTGACACCATTGATGACAAGGTAGGAGCTGCACTTTCAATGGTTTACATTTCTGGAGCTCCTGTTATGTTTGTGGGCTGTGGACAGTCTTACACTGACCTCAAGAAACTCAATGTCAAATCAATTGTGAAGACTCTTCTTAAATGA 1887 0.4425 MLEQLLIFTRGGLILWTCKELGNALKGSPIDTLIRSCLLEERSGAASYNYDAPGASYTLKWTFHNELGLVFVAVYQRILHLLYVEDLLAMVKREFSQIYDPKRTVYPDFDETFRQLKMEALARAEDLKRSNPNAVAGNAKKQAQGNNKLGFEGGNKKKSGGAAKDGGGVDGGDDGNGRRSENGHSNGNFVVAKDSNHSSDVNGRQNGSPNVGAFDVHKLQKLRTKGGKKVVVDTAAKASKAEPNKKVIKKNRVWNEAATKETKLDFTDHSAEDGNRNIDYVVADQGESMMDKEEMISSESEEEEEEEENVGNKRKPDSKNKGWFSSMFQSIAGKANLEKSDLEPALKALKDRLMTKNVAEEIAEKLCESVAASLEGKKLASFTRISSTVHAAMEEALVRILTPRRSIDILRDVHAAKEQRKPYVVVFVGVNGVGKSTNLAKVAYWLLQHKVSVMMAACDTFRSGAVEQLRTHARRLQIPIYEKGYEKDPAVVAKEAIQEASQNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVDQLSKFNQKLADLATSPNPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYTDLKKLNVKSIVKTLLK* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g2011 628 MobiDBLite consensus disorder prediction 129 212 - -
Pvu9g2011 628 Gene3D - 288 404 IPR042101 -
Pvu9g2011 628 Pfam SRP54-type protein, helical bundle domain 324 393 IPR013822 GO:0005525|GO:0006614
Pvu9g2011 628 SMART AAA_5 421 561 IPR003593 -
Pvu9g2011 628 MobiDBLite consensus disorder prediction 181 209 - -
Pvu9g2011 628 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 601 614 IPR000897 GO:0005525|GO:0006614
Pvu9g2011 628 Pfam SRP54-type protein, GTPase domain 423 627 IPR000897 GO:0005525|GO:0006614
Pvu9g2011 628 SMART SRP54_3 422 628 IPR000897 GO:0005525|GO:0006614
Pvu9g2011 628 PANTHER BNAA01G06530D PROTEIN 1 628 - -
Pvu9g2011 628 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 322 403 IPR036225 -
Pvu9g2011 628 Pfam Signal recognition particle, alpha subunit, N-terminal 28 303 IPR007222 GO:0003924|GO:0005047|GO:0005525|GO:0005785|GO:0006886
Pvu9g2011 628 MobiDBLite consensus disorder prediction 286 321 - -
Pvu9g2011 628 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 627 IPR027417 -
Pvu9g2011 628 MobiDBLite consensus disorder prediction 135 149 - -
Pvu9g2011 628 CDD SRalpha_C 435 626 - -
Pvu9g2011 628 Gene3D - 406 628 IPR027417 -
Pvu9g2011 628 SMART SRP54_N_2 319 401 IPR013822 GO:0005525|GO:0006614
Pvu9g2011 628 Gene3D - 1 124 - -
Pvu9g2011 628 Coils Coil 289 309 - -
Pvu9g2011 628 SUPERFAMILY SNARE-like 1 120 IPR011012 -
Pvu9g2011 628 CDD SR_alpha_SRX 3 116 - -
Pvu9g2011 628 PANTHER SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA 1 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g2011 Pvu-Chr9 28848600 28853509 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g2011 K13431 - gmx:100805636 1045.03