Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1993 ATGGGTCAAAGCTCAAACCTTAACGACATTGTGAAAGGCGTTTTCGCTACCGCCTTTTCTCGGCGGGTGGAGATGACGTTGTTAACATTTCGTGAAACAGTGTCGTACTTCAGCACCGATATCGAGATTGTTTCTTCAGCGGTGGTTTCTGGCTACGTGACGCACTCGACACTGTCAACGATGGTGAATTTGGAAGTAGTGGCAGTGCACGAGATTGGGCACTTGCTAGGGTTAGGTCACTCGTCTCTAGAAAAAGTGGTTATGTTTCTGACGATTTTGTCGCGGAGGAAGAAGGTGGTGCTAGCGCATGATTATATTGAAGGGATTCAATTCCTCTACAGTTCCAATCCCAATTTCAATGGTTCCACTGCCACGCTAACACCTGATCTTGACACGTCACATCTCTCAATCTCACCTCTCTGTCACATAAGAAACACTTGA 441 0.4649 MGQSSNLNDIVKGVFATAFSRRVEMTLLTFRETVSYFSTDIEIVSSAVVSGYVTHSTLSTMVNLEVVAVHEIGHLLGLGHSSLEKVVMFLTILSRRKKVVLAHDYIEGIQFLYSSNPNFNGSTATLTPDLDTSHLSISPLCHIRNT* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1993 146 Pfam Matrixin 58 113 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Pvu9g1993 146 PRINTS Matrixin signature 15 30 IPR021190 GO:0004222|GO:0006508|GO:0008270
Pvu9g1993 146 PRINTS Matrixin signature 67 92 IPR021190 GO:0004222|GO:0006508|GO:0008270
Pvu9g1993 146 PRINTS Matrixin signature 101 114 IPR021190 GO:0004222|GO:0006508|GO:0008270
Pvu9g1993 146 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 8 113 - -
Pvu9g1993 146 Gene3D Collagenase (Catalytic Domain) 6 120 IPR024079 GO:0008237
Pvu9g1993 146 PANTHER MATRIX METALLOPROTEINASE 48 133 - -
Pvu9g1993 146 PANTHER MATRIX METALLOPROTEINASE 4 43 - -
Pvu9g1993 146 PANTHER MATRIX METALLOPROTEINASE 4 43 - -
Pvu9g1993 146 PANTHER MATRIX METALLOPROTEINASE 48 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1993 Pvu-Chr9 28592244 28592788 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1993 - - pvu:PHAVU_009G192900g 271.552