Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1989 ATGAATCCCGAGAAGTTTACGCACAAGACCAACGAGGCTCTCGTGAGTGCTCACGAAACGGCGGTGAGCAATGGCCACGCGCAGTTCACTCCTCTTCACCTCGCCTCATCTCTACTCTCCGACAGGGTTGGAATCTTCTTCCAAGTGTTATCTAACGTGGGCGGCGAGGAATCGGCGCGGGCGGCGGAGAGCGTGTTCAGCCAAACGCTGAAGAAACTGCCCTCGCAAACTCCTCCTCCGGACGAGGTTCCGGCAAGCACGAACCTCATGAAAGCCATGCGCAGAGCTCAGACTCTCCAGAAGACACGTGGCGACACGCACCTGGCCGTCGACCAGCTCATCCTCGGCCTTCTGGGGGATTCTCAGATCGCGGAGTTGCTCAAGGAAGCCGGCGTGGAGGCATCGAATGTCAAATCGGAAGTCGAGAAGCTTCGCCGCAAGGATCGGAAGAAAGTGGTAAGCGCCACCGGTGACACAACCTTTAAGGCTTTGCTTACCTATGGAAGAGATCTTGTGGAACAAGCTGGGAAGCTCGACCCGGTTATTGGAAGGGATGAGGAAATACGAAGGGTTGTGAGGATTTTATCTAGAAGGACGAAAAATAACCCGGTTTTGATTGGTGAACCGGGTGTTGGAAAAACTGCCGTGGTTGAAGGGTTGGTTCAGAGGATTGTTAAAGGGGATGTTCCTAGTAATCTTGCTGATGTTAGGCTCTTTGCGTTGGACATGGGTGCGTTGGTTGCGGGCGCGACGTACAGAGGGGAGTTTGAGGAGCGGTTGAAAGCAGTTTTGAAGGAGGTGGAAGAGGCTGAGGGGAAGGTTATTTTGTTCATTGATGAGATTCATTTGGTTCTTGGTGCTGGGAAAGTTGGGGGTTGCATGGATGCTGCAAATTTGTTTAAGCCTATGCTTGCGCGGGGTCAGTTGAGGTGCATTGGTGCCACCACACTCGACGAGTATAGAAAGTATGTGGAGAAGGATGCAGCCTTTGAGAGAAGGTTTCAGCAGGTGTATGTGGCGGAACCGAGTGTCGTTGATACTGTAAGTATACTTCGTGGTTTGAAAGAAAAATACGAAGGTCACCATGGTGTAAGGATTCTTGATCGTGCTTTGGTTGTTGCGGCTCAATTGTCTAGTCGCTACATCACTGGTCGTCATCTTCCAGACAAGGCAATTGATTTAGTTGATGAGGCTTGCGCGAATGAAATTGACAACCTTGAAAGGAAGAGAATGCAGTTAGAAGTGGAACTTCATGCTCTGGAAAAAGAGAAAGACAAAGTCAGCAAAGCTCGTTTAGTTGAAGTGCGGAAAGAGCTGGATGACCTGAGAGACAAGCTGCAACCTTTGATGATGAAGTACAGAAAGGAGAAGAATAGGATTGATGAGATTCGACGACTAAAGCAAAAAAGAGAAGAGCTGAACTTTGGTCTTCTAGAGGCTGAGAGACGATATGATCTTGCCAGAGCTGCGGATTTGCGGTATGGGGCAATTCAGGAGGTGGAATCTGCAATTCAAGAGCTTGAAGGGAACACTGAGGGGAATGTAATGTTGACAGAAACTGTTGGACCTGAACACATTGCGGAGGTCGTGAGCCGCTGGACTGGCATACCAGTGACGAGACTTGGGCAAAATGATAAAGAAAGGTTGATTGGTCTTGGTGACAGATTGCACAATAGGGTTGTAGGGCAAGACCAAGCAGTTAATTGTGTAGCAGAGGCTGTGCTGAGATCAAGAGCCGGGCTTGGGAGACCTCAACAGCCAACGGGCTCCTTCCTGTTCTTGGGTCCAACTGGTGTTGGCAAGACCGAGCTTGCAAAGGCCCTCGCCGAGCAACTTTTTGACAATGAAAATCAGTTGGTGAGAATTGATATGTCTGAGTACATGGAGCAACATTCTGTGTCACGCTTGATTGGTGCACCACCTGGGTATGTTGGACATGAAGAAGGTGGTCAGCTAACTGAAGCTGTAAGGCGAAGACCTTACAATGTGGTTCTGTTTGATGAAGTAGAAAAGGCACACATATCTGTGTTCAACACTCTCCTTCAAGTCTTGGATGATGGAAGGTTAACTGATGGCCAAGGCCGCACTGTGGACTTTAGAAACACAGTCATTATCATGACCTCTAACCTTGGGGCAGAGCACCTCCTTACTGGACTTTCTGGAAAATCTTCGATGCAAGTGGCTCGTGATAAAGTAATGCAAGAGGTGAGAAGACATTTTAGGCCAGAATTGTTGAACCGGCTTGATGAAATTGTCGTATTTGATCCTCTTTCGCACGAGCAACTAAGGAAGGTGGCAAGGTTACAAATGAAGGATGTTGCTTCTCGTCTTGCTGAGAGGGGAATTGCAATGGCAGTGACTGAAGCAGCTCTTGACTATATCCTTAGTGAGAGCTATGATCCGGTTTATGGTGCCAGACCAATTAGGAGGTGGCTCGAGAGGAAGGTTGTGACGGAGCTTTCTAGAATGCTCGTGAAGGAAGAAATTGATGAGAACTCAACTGTTTACATTGATGCTGGTCCTGAGGGCAGCGAGCTAATTTACCGGGTGGAAAACAATGGAGGGATGGTTAATGCTGTAACTGGTCAGAAGTCTGATATTCTGATTCAGATCCCTAATGGATCACTACCAAGATCTGATGCTGCCCAGGCAGTAAAGAAGTTGAAGATTGAGCAAATGGATGAGGATGAAGATGGTGAAATGGAGATGTGA 2712 0.4841 MNPEKFTHKTNEALVSAHETAVSNGHAQFTPLHLASSLLSDRVGIFFQVLSNVGGEESARAAESVFSQTLKKLPSQTPPPDEVPASTNLMKAMRRAQTLQKTRGDTHLAVDQLILGLLGDSQIAELLKEAGVEASNVKSEVEKLRRKDRKKVVSATGDTTFKALLTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLVQRIVKGDVPSNLADVRLFALDMGALVAGATYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGKVGGCMDAANLFKPMLARGQLRCIGATTLDEYRKYVEKDAAFERRFQQVYVAEPSVVDTVSILRGLKEKYEGHHGVRILDRALVVAAQLSSRYITGRHLPDKAIDLVDEACANEIDNLERKRMQLEVELHALEKEKDKVSKARLVEVRKELDDLRDKLQPLMMKYRKEKNRIDEIRRLKQKREELNFGLLEAERRYDLARAADLRYGAIQEVESAIQELEGNTEGNVMLTETVGPEHIAEVVSRWTGIPVTRLGQNDKERLIGLGDRLHNRVVGQDQAVNCVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDNENQLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYNVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLTGLSGKSSMQVARDKVMQEVRRHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVASRLAERGIAMAVTEAALDYILSESYDPVYGARPIRRWLERKVVTELSRMLVKEEIDENSTVYIDAGPEGSELIYRVENNGGMVNAVTGQKSDILIQIPNGSLPRSDAAQAVKKLKIEQMDEDEDGEMEM* 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1989 903 Pfam ATPase family associated with various cellular activities (AAA) 204 316 IPR003959 GO:0005524|GO:0016887
Pvu9g1989 903 Pfam AAA domain (Cdc48 subfamily) 587 751 IPR003959 GO:0005524|GO:0016887
Pvu9g1989 903 Gene3D - 151 343 IPR027417 -
Pvu9g1989 903 Gene3D - 344 534 IPR027417 -
Pvu9g1989 903 SMART ClpB_D2_small_2 757 848 IPR019489 -
Pvu9g1989 903 Coils Coil 127 147 - -
Pvu9g1989 903 Gene3D - 540 756 IPR027417 -
Pvu9g1989 903 Pfam AAA lid domain 344 440 IPR041546 -
Pvu9g1989 903 Gene3D - 757 851 - -
Pvu9g1989 903 PANTHER ATP-DEPENDENT CLP PROTEASE 4 852 - -
Pvu9g1989 903 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 535 IPR027417 -
Pvu9g1989 903 CDD AAA 561 756 - -
Pvu9g1989 903 CDD AAA 182 337 - -
Pvu9g1989 903 SUPERFAMILY Double Clp-N motif 4 141 IPR036628 -
Pvu9g1989 903 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 536 838 IPR027417 -
Pvu9g1989 903 Pfam C-terminal, D2-small domain, of ClpB protein 757 837 IPR019489 -
Pvu9g1989 903 SMART AAA_5 587 758 IPR003593 -
Pvu9g1989 903 SMART AAA_5 199 344 IPR003593 -
Pvu9g1989 903 ProSiteProfiles Clp repeat (R) domain profile. 3 147 IPR004176 -
Pvu9g1989 903 ProSitePatterns Chaperonins clpA/B signature 1. 295 307 IPR018368 GO:0005524
Pvu9g1989 903 Coils Coil 396 430 - -
Pvu9g1989 903 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 591 609 IPR001270 GO:0005524
Pvu9g1989 903 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 636 654 IPR001270 GO:0005524
Pvu9g1989 903 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 665 683 IPR001270 GO:0005524
Pvu9g1989 903 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 698 712 IPR001270 GO:0005524
Pvu9g1989 903 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 4 852 - -
Pvu9g1989 903 Coils Coil 453 483 - -
Pvu9g1989 903 Gene3D - 3 148 IPR036628 -
Pvu9g1989 903 Coils Coil 253 273 - -
Pvu9g1989 903 ProSitePatterns Chaperonins clpA/B signature 2. 621 639 IPR028299 -
Pvu9g1989 903 Pfam Clp amino terminal domain, pathogenicity island component 96 145 IPR004176 -
Pvu9g1989 903 Pfam Clp amino terminal domain, pathogenicity island component 17 57 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1989 Pvu-Chr9 28503666 28507417 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1989 K03695 - tcc:18604817 1517.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1989 9 28503666 28507417 Pvu9g1989 9 28503666 28507417 ECH