Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1985 ATGTTGATTCAGATTCCTCGTCTTACCAACTCTCTCAGAGAACCTTTCGATGTCGACCAGTATTATCTTCATCGCAAAACCATTCTCCATAAACAAAAACCTCGCAATCCTGCAAATTCTCTTGATGAATCGGAACTGGCGCGGAAGATTGTTCACGGGTGGGAAGAAGCTTCTTCAGAAGTGCGGCAGGCCTACAAGCAGTTTATAGGAGCAGTGGTGAACATGGTTGATGGTGAAATGCATTCCGAGGAGTTCCATGAGGTGGCACTGGCTGTGTACCAGCTATTTGGCACTCCAATGGAGGAGGGTTACATTGATAAAATTATTTCAGAACAAAAGTTTGAATTACAAAAACTTATTGGACACCCGCTTGTTGATGCCAAGTTGAGGCAAGTTGCATCACTAGCACAGAGGCTTTTAAATTTGCAGCCACTCAATAAAATATCTGAAAGAAATTTAGACGCCGATGAGGATTTAGAATTTGGAGCTAATTTGATTTTTCAAGCACCTGCTCGTTTCTTGGTTGATGTATCCTTAGATGATGGAGATATGATTGATTTTGAAAGCACTGTTCCATTAGAATTTCACAATGAACAGTATAGTCATACCAGTACAGCAGATCATTCTATTGCCGATGGGGAAAAGTTCAACCTGGCTTGGATAAGAGATGCATGTGATAAAATAGTTAGGAATTGTAATTCACAGCTATCCCGAGATGAATTGGCAATGGCCATTTGCCGGGTTCTTAATTCAGAAAAGCCTGGTGAAGAGATAGCTGGAGATCTGTTGGATCTTGTTGGTGACAGTGCATTTGAAACTGTGCAAATTATTTTATTGCATCGAAAGGAGATTGTTGATTCTATTCATCATGGCTTATTGATATTGAAGTCTGATAAAAATGCTTCAAATGCTCAGTCTCGCATGCCTAGTTATGGAACACAGGTCACTGTTCAAACAGAATCAGGAAAGCAAATTGACAAGCTTCGACGCAAGGAGGAAAAACGAAATAGACGTGGAATAGAACATGCCGGTGATGGTGACTTGTCTGTTCTGGATTTCTCATCTTTACTTCAAGCAAGTGAGAGGAAAAATTTGTTTGATGAAATGATTGGGTCTGGAGATAGGTCCGAGTCAATAGCTGTTACTGCTCTTCCTGAAGGAACTGTAAGGAAACATTTTAAGGGGTACGAAGAGGTTATTATTCCCCCAAAACCAACTGCACCCTTGAAACCTGGAGAAAAGCTGATTGAGATCAGGGAGTTGGATGAGTTTGCACAAGCTGCATTCCGTGGTTACAAATCACTAAACCGAATCCAGAGCAGGATATTTCCAACTGTTTATGGAACTAATGAGAATATTCTAGTGTGTGCTCCCACTGGAGCTGGCAAAACTAACATAGCTATGATTTCAATTCTACACGAGATTGGACAGCACTTCAAGGGGGGTTACTTGCATAAAGAGGAATTTAAGATAGTGTATGTTGCTCCAATGAAGGCTTTGGCTGCAGAAGTGACATCAACATTCAGCCAACGTTTATCTCCTTTGAATATGATTGTTAGAGAGCTTACTGGAGATATGCAGCTCTCTAAAAATGAACTCGAAGAAACTCAGATGATAGTGACAACACCTGAGAAATGGGATGTCATTACACGTAAGAGCAGTGACATGTCACTGTCAATGCTGGTAAAGCTGTTAATTATTGATGAAGTCCATCTACTCAATGATGATAGAGGTCCCGTGATAGAGGCTCTAGTTGCCAGGACCCTTCGGCAGGTGGAATCTACTCAGACAATGATACGCATTGTGGGCCTTTCTGCCACTCTTCCCAATTACCTGGAGGTTGCACAATTTCTCAGGGTAAATCCTGACACAGGCCTTTTCTTCTTTGATTCTACTTACCGTCCAGTGCCTCTTGCACAACAATATATTGGAATTAGTGAGCCAAACTTTGCAGCTCGTAATGAAATGTTGAATGATATATGCTATTCAAAGATTGCTGATTCTCTAAGGCAAGGCCACCAGGCAATGGTGTTTGTCCACTCTCGAAAGGACACTGTGAAGACGGCTACTAAACTGACTGAACTAGCACGGAGATATGAGGATTTGGAACTTTTTAGTAATAATACACATCCACAATATACCTTTATGAAGAAAGAAGTCATTAAATCCAGAAACAAAGACCTTGTTGAACTTTTTGAATATGGTGTGGGTGTGCATCATGCCGGGATGTTACGAGCAGATAGAGGACTTACTGAGCGACTTTTTTCTGATGGACTTCTGAAGGTTCTTGTCTGTACAGCAACTTTGGCGTGGGGTGTCAACCTACCTGCACACACAGTTGTCATTAAGGGTACCCAATTATATGATCCAAAAGCTGGTGGGTGGCGAGACCTTGGTATGCTTGATGTTATGCAGATATTTGGGCGAGCTGGGAGACCTCAGTTTGACAAAAGTGGGGAAGGTATTATAATTACATCTCATGACAAACTAGCTTATTATCTGCGACTGTTGACAAGCCAACTCCCAATTGAAAGCCAGTTTATTAGCTCCTTGAAAGATAATTTAAATGCAGAGGTGGCATTGGGTACTGTTACAAATGTTAAGGAAGCCTGTGCTTGGCTGGGCTATACTTATCTCTTCATAAGGATGAGGATGAATCCTTTAGCCTATGGTATTGGGTGGGATGAGGTGATGGCGGATCCTGCTCTTAGTTCTAAGCAGAGGTCTCTTGTAATTGATGCTGCACGTGCCCTTGATAAAGCAAAAATGATGCGCTTCGATGAGAAAAGTGGCAATTTTTATTGTACTGAGCTTGGTCGCATTGCAAGCCATTTTTACATTCAATATTCGAGTGTTGAAACATACAATGAAATGCTGAGACGCCACATGAATGACAGTGAGGTGATTAACATGATTGCACATTCTTCTGAATTTGAGAATATTGCTGTTCGAGAAGAAGAACAAAATGAGCTAGAGACGTTGGCACGCTCATCATGTCCATTAGAAATTAAGGGTGGTCCTTCCAATAAACATGGAAAGATTTCCATCTTGATTCAGTTGTACATATCTCGAGGTTCAATAGATTCTTTTTCTTTGATATCCGATGCTGCATATATTAGTGCAAGCTTGGCTCGAATAACACGGGCGTTATTTGAGATTTGCTTACGAAGAGGTTGGTGTGAGATGTCTTTGTTTATGTTGGAGTATAGCAAAGCTGTGGATCGTCAAGTTTGGCCACATCAACATCCTCTTAGACAATTTGACAAGGACCTTTCTGCAGAAATATTGCGGAAGCTTGAAGAACGTGGAGCTGACCTAGATCGCTTGTTTGAGATGGAGGAGAAAGACATTGGGGCATTAATTCGGTATGCACCAGGAGGAAGGTTGGTCAAGCAAAACCTAGGGTATTTTCCATCACTTCAATTATCAGCAACTGTGAGTCCAATTACCAGAACTGTATTGAAGGTTGATTTGGTCATTACGCCTGTTTTCATTTGGAAAGATCGTTTTCATGGTACTGCTCAACGTTGGTGGATTTTGGTAGAGGATTCTGAGAATGATCACATCTACCACTCGGAACTCTTTACGTTGACAAAGAGGATGTCTAGGGGTGAACCTTACAAGCTTTCCTTCACTGTACCTATATTTGAACCACATCCTCCACAATATTACATCCATGCTGTTTCTGATTCATGGCTTCATGCTGAGGCATTCTACACTATTACTTTTCACAATTTACCATTGCCAGAGGCTCGGACTTCTCACACAGAACTCCTTGATTTAAAACCTCTTCCTGTGTCTTCTCTTGGAAACAATTCTTATGAAGCATTGTATAAATTTTCACATTTTAATCCTATACAAACACAGACTTTTCATGCCTTGTATCACACAGACAATAATGTTCTGTTAGGAGCTCCAACTGGAAGTGGAAAAACTATATCTGCTGAGCTTGCTATGCTTCGTCTTTTCAATACTCAGCCTGATATGAAGGTTATTTACATAGCTCCTTTGAAAGCTATTGTTAGGGAAAGAATGAGTGATTGGCAAAAGCGTCTTGTCTCTCAACTAAGGAAAAAAATGGTTGAAATGACTGGAGATTATACTCCTGATTTGACGGCTCTTTTGTCAGCCGATATCATCATATCTACTCCTGAAAAGTGGGATGGAATTAGTCGTAATTGGCATACCCGTAGTTATGTCACAAAGGTTGGACTTATGATTTTGGATGAGATTCACTTATTGGGAGCAGATCGTGGGCCAATCCTTGAGGTTATTGTTTCTAGGATGAGGTATATATCATCCCAAACAGAGCGAGCAGTACGATTTATTGGCCTTTCTACAGCACTGGCTAATGCTGGTGATCTAGCTGACTGGTTAGGTGTTGAGGAAATTGGACTCTTCAATTTCAAGCCAAGTGTGAGGCCTGTACCTCTGGAAGTTCATATTCAGGGTTATCCTGGAAAGTATTATTGCCCAAGGATGAACAGCATGAATAAACCAGCATATGCTGCAATATGCACACATTCACCCACAAAACCAGTTCTTATATTTGTCTCATCCCGGCGCCAGACAAGACTTACTGCACTTGACCTGATTCAGTTCGCCGCGTCAGATGAACAATCAAGACAATTCCTTAGTTTGCCTGAGGAAACCCTGCAGATGGTTCTGTCTCAAGTCTCCGACCAAAACCTTAGACATACTTTACAATTTGGCATTGGATTACATCATGCAGGACTGAATGACAAAGACAGATCACTGGTTGAGGAACTCTTTGGAAACAACAAAATTCAGATATTGGTTTGTACCAGCACATTGGCTTGGGGTGTGAATCTTCCAGCTCATCTGGTGATTATCAAGGGGACAGAATACTATGATGGAAAAGCAAAGAGGTATGTTGATTTTCCAATCACCGATATTTTGCAAATGATGGGTCGTGCTGGACGCCCTCAGTTTGATCAACATGGGAAAGCTGTGATTCTTGTTCATGAACCCAAGAAGAGCTTCTATAAAAAGTTCTTGTATGAACCCTTTCCTGTTGAGAGTAGTTTGAGGGAACATTTGCACGATCACATTAACGCTGAAATTATTTCTGGAACCATTTGTCATAAACAAGATGCAGTGCATTATCTTACATGGACTTACTTATTTCGTAGACTGATGGTAAATCCTGCTTACTATGGACTGGAGAATGCTGACACCGAATTTCTAAATTCATATTTGTCTAGCCTAGTGCAGAACACATTTGAGGATTTGGAAGACAGCGGATGCATAAAGATGGATGAAGAGAAGGTGGAGTCCATGATGTTGGGTTCAATTGCATCTCAGTATTACCTCAGCTACATGACTGTATCAATGTTTGGTTCAAACATAGGTCCAGATACATCACTTGAAGTCTTTCTGCATATCTTATCTGCTGCTTCTGAATTTGATGAACTTCCTGTGCGTCATAATGAGGAAAAATACAATGAAGCACTGTCTGAGAAAGTTAAATATCCAGTGGATAAGAACCGTCTAGACGATCCTCACATCAAAGCAAATCTTCTATTTCAGGCTCATTTTTCTCAATTGGAGTTACCAATTAGTGACTATGTCACAGACTTGAAATCTGTATTAGATCAGAGTATACGCATAATTCAGGCCATGATTGATATATGCGCAAACAGTGGGTGGCTTTCTAGCTCAATTACTTGCATGCGTCTTCTGCAAATGGTCATGCAGGGCTTGTGGTTTGATGAGGACACTTCCTTATGGATGCTGCCATGCATGAATACAGATCTGATAAGTTTACTTAGCCAAAGAGGAATTTCTAGTGTACAGGAATTATTAGACATTCCCAAAACAGCATTGCAGACTGTAACTGCAAATTTCCCAGCTTCAAGATTGTACCAGGATCTACAACATTTCCCTCATATCAAAATGAAATTAAAGGTTCAGAGGAGGGACACTGATGGTGAGAGGTCTGACATAATAAATATCAGATTAGAGAAGATCAATTCTAGACGACACTCCTCTAGGGCATTTGTTCCTCGATTTCCAAAGATAAAAGAGGAACAGTGGTGGTTGGTTCTTGCTAATACCTCTACATCTGAGCTATATGCTTTGAAAAGAGTTTCTTTTTCAGGTCACTTAACTACCTCAATGAAGTTACCACCTACTCCAGCTAATCTTCAGGGCGTAAAACTGATTTTAGTCTCCGATTGTTACATTGGATTTGAACAAGAACACTCCATTGAAAAGCTTGGTGTATGA 6249 0.4081 MLIQIPRLTNSLREPFDVDQYYLHRKTILHKQKPRNPANSLDESELARKIVHGWEEASSEVRQAYKQFIGAVVNMVDGEMHSEEFHEVALAVYQLFGTPMEEGYIDKIISEQKFELQKLIGHPLVDAKLRQVASLAQRLLNLQPLNKISERNLDADEDLEFGANLIFQAPARFLVDVSLDDGDMIDFESTVPLEFHNEQYSHTSTADHSIADGEKFNLAWIRDACDKIVRNCNSQLSRDELAMAICRVLNSEKPGEEIAGDLLDLVGDSAFETVQIILLHRKEIVDSIHHGLLILKSDKNASNAQSRMPSYGTQVTVQTESGKQIDKLRRKEEKRNRRGIEHAGDGDLSVLDFSSLLQASERKNLFDEMIGSGDRSESIAVTALPEGTVRKHFKGYEEVIIPPKPTAPLKPGEKLIEIRELDEFAQAAFRGYKSLNRIQSRIFPTVYGTNENILVCAPTGAGKTNIAMISILHEIGQHFKGGYLHKEEFKIVYVAPMKALAAEVTSTFSQRLSPLNMIVRELTGDMQLSKNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESTQTMIRIVGLSATLPNYLEVAQFLRVNPDTGLFFFDSTYRPVPLAQQYIGISEPNFAARNEMLNDICYSKIADSLRQGHQAMVFVHSRKDTVKTATKLTELARRYEDLELFSNNTHPQYTFMKKEVIKSRNKDLVELFEYGVGVHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRMNPLAYGIGWDEVMADPALSSKQRSLVIDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVINMIAHSSEFENIAVREEEQNELETLARSSCPLEIKGGPSNKHGKISILIQLYISRGSIDSFSLISDAAYISASLARITRALFEICLRRGWCEMSLFMLEYSKAVDRQVWPHQHPLRQFDKDLSAEILRKLEERGADLDRLFEMEEKDIGALIRYAPGGRLVKQNLGYFPSLQLSATVSPITRTVLKVDLVITPVFIWKDRFHGTAQRWWILVEDSENDHIYHSELFTLTKRMSRGEPYKLSFTVPIFEPHPPQYYIHAVSDSWLHAEAFYTITFHNLPLPEARTSHTELLDLKPLPVSSLGNNSYEALYKFSHFNPIQTQTFHALYHTDNNVLLGAPTGSGKTISAELAMLRLFNTQPDMKVIYIAPLKAIVRERMSDWQKRLVSQLRKKMVEMTGDYTPDLTALLSADIIISTPEKWDGISRNWHTRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVEEIGLFNFKPSVRPVPLEVHIQGYPGKYYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDEQSRQFLSLPEETLQMVLSQVSDQNLRHTLQFGIGLHHAGLNDKDRSLVEELFGNNKIQILVCTSTLAWGVNLPAHLVIIKGTEYYDGKAKRYVDFPITDILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLREHLHDHINAEIISGTICHKQDAVHYLTWTYLFRRLMVNPAYYGLENADTEFLNSYLSSLVQNTFEDLEDSGCIKMDEEKVESMMLGSIASQYYLSYMTVSMFGSNIGPDTSLEVFLHILSAASEFDELPVRHNEEKYNEALSEKVKYPVDKNRLDDPHIKANLLFQAHFSQLELPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMRLLQMVMQGLWFDEDTSLWMLPCMNTDLISLLSQRGISSVQELLDIPKTALQTVTANFPASRLYQDLQHFPHIKMKLKVQRRDTDGERSDIINIRLEKINSRRHSSRAFVPRFPKIKEEQWWLVLANTSTSELYALKRVSFSGHLTTSMKLPPTPANLQGVKLILVSDCYIGFEQEHSIEKLGV* 2083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1985 2082 PANTHER SEC63 DOMAIN-CONTAINING 465 2078 - -
Pvu9g1985 2082 PANTHER SEC63 DOMAIN-CONTAINING 424 464 - -
Pvu9g1985 2082 SUPERFAMILY E set domains 1988 2077 IPR014756 -
Pvu9g1985 2082 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1469 1678 IPR027417 -
Pvu9g1985 2082 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 424 464 - -
Pvu9g1985 2082 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3 465 2078 - -
Pvu9g1985 2082 MobiDBLite consensus disorder prediction 303 322 - -
Pvu9g1985 2082 CDD DEXHc_ASCC3_1 434 630 - -
Pvu9g1985 2082 CDD DEXHc_ASCC3_2 1282 1470 - -
Pvu9g1985 2082 Pfam Helicase conserved C-terminal domain 670 812 IPR001650 -
Pvu9g1985 2082 Pfam Helicase conserved C-terminal domain 1555 1648 IPR001650 -
Pvu9g1985 2082 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1292 1467 IPR014001 -
Pvu9g1985 2082 PIRSF BRR2 13 2081 - -
Pvu9g1985 2082 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 444 626 IPR014001 -
Pvu9g1985 2082 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 629 842 IPR027417 -
Pvu9g1985 2082 SUPERFAMILY "Winged helix" DNA-binding domain 842 947 IPR036390 -
Pvu9g1985 2082 MobiDBLite consensus disorder prediction 303 324 - -
Pvu9g1985 2082 Gene3D - 1774 1910 - -
Pvu9g1985 2082 Pfam DEAD/DEAH box helicase 1285 1449 IPR011545 GO:0003676|GO:0005524
Pvu9g1985 2082 Pfam DEAD/DEAH box helicase 437 610 IPR011545 GO:0003676|GO:0005524
Pvu9g1985 2082 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1169 1467 IPR027417 -
Pvu9g1985 2082 Gene3D - 1680 1773 IPR036388 -
Pvu9g1985 2082 SUPERFAMILY "Winged helix" DNA-binding domain 1678 1778 IPR036390 -
Pvu9g1985 2082 SMART helicmild6 722 814 IPR001650 -
Pvu9g1985 2082 SMART helicmild6 1562 1650 IPR001650 -
Pvu9g1985 2082 Gene3D - 1248 1474 IPR027417 -
Pvu9g1985 2082 SUPERFAMILY Sec63 N-terminal domain-like 963 1138 - -
Pvu9g1985 2082 Gene3D - 936 1078 - -
Pvu9g1985 2082 Gene3D - 423 634 IPR027417 -
Pvu9g1985 2082 SMART AAA_5 1297 1468 IPR003593 -
Pvu9g1985 2082 SMART AAA_5 449 630 IPR003593 -
Pvu9g1985 2082 CDD SF2_C_Ski2 634 825 - -
Pvu9g1985 2082 Gene3D - 1080 1134 - -
Pvu9g1985 2082 Gene3D - 635 837 IPR027417 -
Pvu9g1985 2082 Gene3D C2 domain 1137 1246 IPR035892 -
Pvu9g1985 2082 SMART ultradead3 1279 1483 IPR014001 -
Pvu9g1985 2082 SMART ultradead3 431 642 IPR014001 -
Pvu9g1985 2082 SMART Sec63_2 1766 2079 IPR004179 -
Pvu9g1985 2082 SMART Sec63_2 935 1243 IPR004179 -
Pvu9g1985 2082 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 384 619 IPR027417 -
Pvu9g1985 2082 Gene3D - 1475 1679 IPR027417 -
Pvu9g1985 2082 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 664 859 IPR001650 -
Pvu9g1985 2082 Pfam Sec63 Brl domain 1767 2077 IPR004179 -
Pvu9g1985 2082 Pfam Sec63 Brl domain 935 1241 IPR004179 -
Pvu9g1985 2082 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1540 1707 IPR001650 -
Pvu9g1985 2082 Gene3D C2 domain 1969 2079 IPR035892 -
Pvu9g1985 2082 CDD SF2_C_Ski2 1474 1662 - -
Pvu9g1985 2082 Gene3D - 844 934 IPR036388 -
Pvu9g1985 2082 SUPERFAMILY Sec63 N-terminal domain-like 1799 1952 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1985 Pvu-Chr9 28419311 28454076 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1985 K18663 - gmx:100811503 3899.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1985 9 28419311 28454076 Pvu9g1985 9 28419311 28454076 ECH