Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1965 ATGAGATCAGGCTTTTACAGAGGAAACAATAAAGAAATGGCTAACTCAGCTCACTCAATGGACAACACTGCCCAAAAGTTGGCCGGAAAAGTTATTATTATCACCGGAGGAGCAAGCGGCATCGGCGAAGAGACTGCGCGTCTGTTTGCCAACCATGGTGCGCGAATGGTTGTGATCGCAGACATCCAAGATGAACTGGGCAACCTAGTCGCAGCTTCCATTGGATCTGACAGGTGCACCTATGTCCATTGTGATGTGGGAGAGGAAGAGCAAGTGAAAGAGCTTGTGGATTCAACGGTCAACGGTTATGGCCAATTGGACGTCATGTTCAGCAACGCCGGCATCCTTAGTCCCTCCGACCAGACAATCCTCGACCTCGACTTTTCCCACTTCGACCGTCTTTTCGCCGTCAATACGAGGGGCATGGCGGCGTGTGTGAAGCACGCCGCGCGCTCGATGGTGGAGCGGCGCGTGAGGGGCAGCATAGTATGCACAGCGAGCGTGGCGGCGTCGCACGGCACCAAGTCGCGCACGGACTACGCGATGTCAAAGCACGCGGTGAAAGGGCTGGTGCGTTGCGCGAGTGTGCAGCTGGGGGCGCACGGTATCAGGGTGAACTGCGTCTCACCGAGTGGGTTGGCCACACCGTTGACGCGTACGTCGCACGCGACGAAGGAGATCGAAGAGCTGCAGAAAATGTATGCGCAGAGCTCCAGACTGAAAGGCGTGTTTTTGAGTGCCAAACATGTTGCGGATGCGGTCCTGTTTCTGGCGTCCGGTGACTCCAACTTTGTAACCGGACACGATCTTGTGGTGGACGGTAGTTTTGGGGTTTGA 837 0.5568 MRSGFYRGNNKEMANSAHSMDNTAQKLAGKVIIITGGASGIGEETARLFANHGARMVVIADIQDELGNLVAASIGSDRCTYVHCDVGEEEQVKELVDSTVNGYGQLDVMFSNAGILSPSDQTILDLDFSHFDRLFAVNTRGMAACVKHAARSMVERRVRGSIVCTASVAASHGTKSRTDYAMSKHAVKGLVRCASVQLGAHGIRVNCVSPSGLATPLTRTSHATKEIEELQKMYAQSSRLKGVFLSAKHVADAVLFLASGDSNFVTGHDLVVDGSFGV* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1965 278 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Pvu9g1965 278 PRINTS Glucose/ribitol dehydrogenase family signature 104 115 IPR002347 -
Pvu9g1965 278 PRINTS Glucose/ribitol dehydrogenase family signature 154 170 IPR002347 -
Pvu9g1965 278 PRINTS Glucose/ribitol dehydrogenase family signature 180 199 IPR002347 -
Pvu9g1965 278 PRINTS Glucose/ribitol dehydrogenase family signature 201 218 IPR002347 -
Pvu9g1965 278 PRINTS Glucose/ribitol dehydrogenase family signature 240 260 IPR002347 -
Pvu9g1965 278 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 22 276 - -
Pvu9g1965 278 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 104 115 IPR002347 -
Pvu9g1965 278 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 168 IPR002347 -
Pvu9g1965 278 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 180 199 IPR002347 -
Pvu9g1965 278 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 274 IPR036291 -
Pvu9g1965 278 Pfam Enoyl-(Acyl carrier protein) reductase 36 274 - -
Pvu9g1965 278 Gene3D - 16 277 - -
Pvu9g1965 278 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 3B-LIKE 22 276 - -
Pvu9g1965 278 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 167 195 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1965 Pvu-Chr9 28196415 28197712 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1965 18 278 Acyl Lipid Metabolism Gene Families AT1G24360 27.444 4.25e-20 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1965 - - gmx:100817513 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1965 9 28196415 28197712 Pvu9g1965 9 28196415 28197712 ECH