Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1917 ATGTTCAACCTTGTTCGGCGTAAAGGCATCCCCATCATCAACGTTGCTCTCACCCACCCTTCCTCATCATTCTCCTCTGACGCTAACGCCATCATCCACATCCTCACGTCCTCCAACACCATCACTGAAGCCACCTTCCTCACCAAACAGCACCTCCAAAACTCCCGCAAACCCCTCACTCTCTTTTCCTCCCTTTTCCAATCTCTCAACCGCGCCAACCTCACGCCACGCGCGTTTGGAGTTCTCGTACTCGCCTTCTGCCAACTGGGTCTCGTCCAGGAAGCCCTCTGGGTCTTCAAAAACCATTCTTTTTTGCCTCCGTTACAGCCTTGTAACGCGCTTCTTCATGGCCTCGTCAAGACCCAGATGTTCGATTCGGCGTGGGAGGTGTACCGAGACATGGTGTCGCGCGGGTTTTCCGCCACCGTCATCACCTACGGCATTTTGATGAACTGTTGTTGTGTACGGGGTGATTTTAGCAACGCGCGTAGGGTGTTCGATGAAATGCTTGAGAGAGGGATTGAACCCAACATTGTGATTTACACTATTCTCATTCGAGTTTTTTGCAACGATGGTCAAATGGGAGAAGCCGAGGGTGTGTTTAGACGGATGAGAAAATCTGGGGTGGTGACACCCAATTTGTACACTTATAAGACCCTCATGGATGGGTATATCAAGATGGGTGAAATGAGACGGGTTTTTGATTTGTACAGTGATATGCTAAATCATGGCTTGCACCCTGATGCTGTCACTTTTGCTACTTTGATTGATGTTCTCTGCAAGATGAGGGATTTGAGGGCTGCGCGAAACTGTTTTGCTTATATGGCCAAGTTTGATGTTGTTCCTAATGCACATGCTTATAATTCTTTGATTGATGGGTATTGTAAGGCGGGGAACTTGCCTGAAGCAATGCATTTGTGGGTAGAAATGGAAAGGTGTGGAATCTACCCTGATGTTTTTACATACAATATACTTATCAAGGGTCTTTGTGACTCGGGTAGATTGGAAGATGCTAAGGGTTTCATGGAGAAAATGGATGAAGCTGGGGTTCTTACCAATTTTGTGACCTACAATGTGGTGATTGATGGGTGCTGTAAAACTGGTGACATGGAGAAGGCTATTGAGGTGTGTTCCCAAATGACTGAAAGGAAAATTGAACCTAATGTTATCACATTTTCAGCATTGATTGATGGGTTTTGCAAGAAAGGTAATGTAACAGCTGCAATGGGCTTGTACACAGAAATGGTGATCAAGGGTCTTGTGCCTGACGTGGTAACTTACACTGCGTTGATCGATGGTCACTGCAAGGTTGGGAACACCAAAGAGGCTTTCAGGTTGCACAGGGAGATGCTAGATGCAGGACTAGCACCCAATGTGTTCACAGTTAGTTGTATAATCGATGGCCTTTTGAAAGATGGAAAGATAAAGGATGCAATCAAACTTTTCTTGGAGAAAACTAGAGCTGGTTGCTCTGGTGGTAAAATGGATATCAGATGTAATGGTTTCATACCAGACATGCTAGTTTATGTCACCATGTTACAGACACACTTTCAGTCCAAGCATATGGTTGATGTAATGATGCTGCATGCGGACATGATGAAAATGGGTGTTATGCCCAATACTTTCTTATATCGTTGGCATCACAAAGCTGAGTTCCCCGTTAGCCTCAAACCACCAAGACCTAACCAAACCCTTAGGAAGCACCTTGAATGCAACAGGCACACCGAAGTGCTTCTACTCTTCAGATCCTTCTTAAGAAAAAGACCCACTTTCAACGCCATTGACAGCTTTTCTTTGCTTTATGCCCTCAAAGCCTGCAACAACAAACACTCTTCCACCCAAGGAAAACAACTGCATACCCTCATCGTAAAACTTGGGTACCAAGCCATAGTTCAACTCCAGACATCCCTTTTAAAAGTCTACGCCCAGAGTGGCAACCTTCGTGATGCGCACCAAGTGTTCGTTCAAATACCCTCAAAGAATATCATATGCTGGACCTCTTTGATTTCTGCCTATGTTGACAACCACAAGCCTGGGACAGCTCTGCAACTGTTCAGAGAGATGCAGAGGAACAATGTAGAACCTGATCAAGTCACTGTGACCGTTGCCCTCTCTGCCTGTGCTGAGACCGGGGCACTGGAAATGGGTGAATGGATTCACGCTTTCGTGAGGTGTAAGCAAGGGCTGAACAGAGATGTGTGTTTGGATAATGCTCTTATAAACATGTATGCGAAATGTGGGGATGTTGTGACGGCTAGGAAGGGCGATTGTGTCATGACCCCAAATGACGTAACGTTCATTGGAGTTTTAATGGCTTGCAGCCATGCAGGGTTGGTTGAGGAAGGGAAGTGGCATTTCAGAAGCATGAGTGAAGTTTATGGTATAGAGCCCAGAGAGGCTCATTTTGGCTGTATGGTGGATCTTTTATGCAGAGGTGGGCATCTGAGAGATGCCTATGACTTCATTATGGAGATGACAATGCCGCCAAATGTGATTGTCTGGCGAACCTTGTTGGGGGCTTGCAGTGTTCAAGGCTTGTGGACCAACAAGATATTTGTGAGGAATCAGATAAAACAGTCAAGAGCTCCTGGTTGTAGCTCCATTGAGGTGGAAAGTGGGGTTGGTGAATTTCTGATCGTTGATGGTGATCATCCTTTATGA 2661 0.4589 MFNLVRRKGIPIINVALTHPSSSFSSDANAIIHILTSSNTITEATFLTKQHLQNSRKPLTLFSSLFQSLNRANLTPRAFGVLVLAFCQLGLVQEALWVFKNHSFLPPLQPCNALLHGLVKTQMFDSAWEVYRDMVSRGFSATVITYGILMNCCCVRGDFSNARRVFDEMLERGIEPNIVIYTILIRVFCNDGQMGEAEGVFRRMRKSGVVTPNLYTYKTLMDGYIKMGEMRRVFDLYSDMLNHGLHPDAVTFATLIDVLCKMRDLRAARNCFAYMAKFDVVPNAHAYNSLIDGYCKAGNLPEAMHLWVEMERCGIYPDVFTYNILIKGLCDSGRLEDAKGFMEKMDEAGVLTNFVTYNVVIDGCCKTGDMEKAIEVCSQMTERKIEPNVITFSALIDGFCKKGNVTAAMGLYTEMVIKGLVPDVVTYTALIDGHCKVGNTKEAFRLHREMLDAGLAPNVFTVSCIIDGLLKDGKIKDAIKLFLEKTRAGCSGGKMDIRCNGFIPDMLVYVTMLQTHFQSKHMVDVMMLHADMMKMGVMPNTFLYRWHHKAEFPVSLKPPRPNQTLRKHLECNRHTEVLLLFRSFLRKRPTFNAIDSFSLLYALKACNNKHSSTQGKQLHTLIVKLGYQAIVQLQTSLLKVYAQSGNLRDAHQVFVQIPSKNIICWTSLISAYVDNHKPGTALQLFREMQRNNVEPDQVTVTVALSACAETGALEMGEWIHAFVRCKQGLNRDVCLDNALINMYAKCGDVVTARKGDCVMTPNDVTFIGVLMACSHAGLVEEGKWHFRSMSEVYGIEPREAHFGCMVDLLCRGGHLRDAYDFIMEMTMPPNVIVWRTLLGACSVQGLWTNKIFVRNQIKQSRAPGCSSIEVESGVGEFLIVDGDHPL* 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1917 886 SUPERFAMILY TPR-like 76 274 IPR011990 GO:0005515
Pvu9g1917 886 Pfam PPR repeat 802 825 IPR002885 -
Pvu9g1917 886 Pfam PPR repeat 79 100 IPR002885 -
Pvu9g1917 886 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 661 695 IPR002885 -
Pvu9g1917 886 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Pvu9g1917 886 Pfam PPR repeat 244 275 IPR002885 -
Pvu9g1917 886 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Pvu9g1917 886 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
Pvu9g1917 886 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 247 IPR002885 -
Pvu9g1917 886 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Pvu9g1917 886 Gene3D Tetratricopeptide repeat domain 276 346 IPR011990 GO:0005515
Pvu9g1917 886 Gene3D Tetratricopeptide repeat domain 347 417 IPR011990 GO:0005515
Pvu9g1917 886 Gene3D Tetratricopeptide repeat domain 418 488 IPR011990 GO:0005515
Pvu9g1917 886 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 458 492 IPR002885 -
Pvu9g1917 886 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 176 IPR002885 -
Pvu9g1917 886 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Pvu9g1917 886 Gene3D Tetratricopeptide repeat domain 160 275 IPR011990 GO:0005515
Pvu9g1917 886 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 107 141 IPR002885 -
Pvu9g1917 886 Pfam PPR repeat family 660 708 IPR002885 -
Pvu9g1917 886 Pfam PPR repeat family 353 401 IPR002885 -
Pvu9g1917 886 Pfam PPR repeat family 422 471 IPR002885 -
Pvu9g1917 886 Pfam PPR repeat family 176 225 IPR002885 -
Pvu9g1917 886 Pfam PPR repeat family 111 154 IPR002885 -
Pvu9g1917 886 Pfam PPR repeat family 282 331 IPR002885 -
Pvu9g1917 886 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Pvu9g1917 886 PANTHER OSJNBA0060P14.6 PROTEIN 28 553 - -
Pvu9g1917 886 PANTHER OSJNBA0060P14.6 PROTEIN 617 764 - -
Pvu9g1917 886 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
Pvu9g1917 886 TIGRFAM PPR: pentatricopeptide repeat domain 425 459 IPR002885 -
Pvu9g1917 886 TIGRFAM PPR: pentatricopeptide repeat domain 355 389 IPR002885 -
Pvu9g1917 886 TIGRFAM PPR: pentatricopeptide repeat domain 111 142 IPR002885 -
Pvu9g1917 886 TIGRFAM PPR: pentatricopeptide repeat domain 144 178 IPR002885 -
Pvu9g1917 886 TIGRFAM PPR: pentatricopeptide repeat domain 320 350 IPR002885 -
Pvu9g1917 886 TIGRFAM PPR: pentatricopeptide repeat domain 250 284 IPR002885 -
Pvu9g1917 886 TIGRFAM PPR: pentatricopeptide repeat domain 390 424 IPR002885 -
Pvu9g1917 886 TIGRFAM PPR: pentatricopeptide repeat domain 286 319 IPR002885 -
Pvu9g1917 886 TIGRFAM PPR: pentatricopeptide repeat domain 663 696 IPR002885 -
Pvu9g1917 886 TIGRFAM PPR: pentatricopeptide repeat domain 179 213 IPR002885 -
Pvu9g1917 886 TIGRFAM PPR: pentatricopeptide repeat domain 215 249 IPR002885 -
Pvu9g1917 886 Gene3D Tetratricopeptide repeat domain 561 723 IPR011990 GO:0005515
Pvu9g1917 886 Gene3D Tetratricopeptide repeat domain 25 159 IPR011990 GO:0005515
Pvu9g1917 886 Gene3D Tetratricopeptide repeat domain 724 872 IPR011990 GO:0005515
Pvu9g1917 886 PANTHER ATPASE EXPRESSION PROTEIN 3 28 553 - -
Pvu9g1917 886 PANTHER ATPASE EXPRESSION PROTEIN 3 617 764 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1917 Pvu-Chr9 27398251 27402842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1917 576 845 Glycosyltransferase AT1G05670 21.575 3.65e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1917 - - pvu:PHAVU_009G185600g 1810.42