Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1808 ATGAGCATTTGTAGGTCCCTATTGAGGGTGAAGCAGTTACACACATTTCTTTTGAAGACCCATCTCTTAGAAGACCCTTTTTACGCAACAAAAATTGTCAGGCTGTATGCAATCAACAATGACATTAACTCAGCCCGTCATGTGTTCGACAAAACTTCCAACCGAAGTGTCTATCTTTGGAATTCCATGATTCGAGCTTTTGCGCAGTGCCAAAGATTTTTCAATGCAATCTCTCTGTTTAGAACCATGGTTGGGGCTGACATAAGTCCTGATGGTCACACTTATGCTTGTCTTACACGTGCGTGTGCTGACAACTTTGATTTCGGTATGCTAAGGCGTGTTCATGGTGGTGCTGTGGCTGCAGGATTAGGACTGGACCTTGTTTGTTGTAGTGCACTTGTGACTGCTTATTCAAAACTTGGCCTTGTTCATGAAGCTCGTAGAGTGTTCAATAGGATCACTGAACCGGATATAGTTTTATGGAATTCGTTGATTTCTGGTTATGGGAGCTCTGGTCTGTGGGATGTGGGGATGCAGATGTTTAGTGCGATGAAACTTGTCGGGAAGAAGCCTGATGAATATACCCTGGCTGGGTTGCTTGTTGGTATTGTAGATTCTGGGGTGCTGAGCATTGGCCAAGGATTACATTGTTTAAGTCAAAAGAGTGGCCTTGATTCTGATTCTCATGTTGGTAGTTTGCTGGTGAGTTTGTACTCGAGATGTAAGTGCATGGCTTCTGCATATAGAGTCTTTTGCAGTATTTTGAATCCTGATTTGGTCACATGGTCTGCTCTTATTGTGGGGTATTCTCAAGCTGGGGAGTATGAGAAGGTGCTGCACCTTTTTAGAAAATTGAACATGGAAGATAAGAAGCCTGATACTGTCTTGGTTGCCAGTGTATTGGCTTCTATTGCTCATACGGCAAATGTAGGACTAGGGTGCGAGGTACATGGTTATGCTCTTCGGCATGGATTGGAACTAGATGTCAGGGTCTCCTCTGCTCTAATAGACATGTATTCAAAGTGTGGTTGCTTGCAGTTGGGAATTTGTGTTTTCAGGACAATGCCAAAGCGGAATATTGTTTCTTATAATTCTGTAATTTTGGGTTTTGGTTTGCATGGATATGCTTCTGAGGCTTTTAAGATGTTTGATAAGATGCTGGAGAAAGGATTGGTACCTGATGAAGCCACATTCTCTTCTCTCCTATCTGCCTGTTGTCATGCTGGCCTTGTCAAAGATGGCTGGGAAATTTTCCGGAGAATGAAGGAGGAATTTAACATCAGAGCTAGGGCTGAACACTATGTTTACATGGTGAAGCTCCTTGGCAGTTCTGGGGAGTTGGAGGAGGCTTACAGTCTGACCCAGTCTTTACCAGAACCTGTAGACAAGGCCATCCTGGGAGCCTTATTATCTTGCTGTAATTCTTGCGGAAATTCCGAGCTGGCAGAAACTGTAGCACAACAACTTTTTTCAAATAATCCTGCTGATAATGTATACAGGGTTATGCTTTCTAACATATATGCTGGTGATGGGAGGTGGGATGATGTTAAAAGGTTGAGGGATAGAATGACAGGAGGTCTAAGAAAAATGCCCGGACTAAGCTGGATTGAAAGCAGTTAG 1620 0.4333 MSICRSLLRVKQLHTFLLKTHLLEDPFYATKIVRLYAINNDINSARHVFDKTSNRSVYLWNSMIRAFAQCQRFFNAISLFRTMVGADISPDGHTYACLTRACADNFDFGMLRRVHGGAVAAGLGLDLVCCSALVTAYSKLGLVHEARRVFNRITEPDIVLWNSLISGYGSSGLWDVGMQMFSAMKLVGKKPDEYTLAGLLVGIVDSGVLSIGQGLHCLSQKSGLDSDSHVGSLLVSLYSRCKCMASAYRVFCSILNPDLVTWSALIVGYSQAGEYEKVLHLFRKLNMEDKKPDTVLVASVLASIAHTANVGLGCEVHGYALRHGLELDVRVSSALIDMYSKCGCLQLGICVFRTMPKRNIVSYNSVILGFGLHGYASEAFKMFDKMLEKGLVPDEATFSSLLSACCHAGLVKDGWEIFRRMKEEFNIRARAEHYVYMVKLLGSSGELEEAYSLTQSLPEPVDKAILGALLSCCNSCGNSELAETVAQQLFSNNPADNVYRVMLSNIYAGDGRWDDVKRLRDRMTGGLRKMPGLSWIESS* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1808 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Pvu9g1808 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 56 90 IPR002885 -
Pvu9g1808 539 Pfam E motif 478 537 IPR046848 -
Pvu9g1808 539 Pfam PPR repeat family 358 407 IPR002885 -
Pvu9g1808 539 Pfam PPR repeat family 156 199 IPR002885 -
Pvu9g1808 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 424 IPR002885 -
Pvu9g1808 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Pvu9g1808 539 Gene3D Tetratricopeptide repeat domain 208 358 IPR011990 GO:0005515
Pvu9g1808 539 Gene3D Tetratricopeptide repeat domain 115 207 IPR011990 GO:0005515
Pvu9g1808 539 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Pvu9g1808 539 Pfam PPR repeat 260 285 IPR002885 -
Pvu9g1808 539 Pfam PPR repeat 128 153 IPR002885 -
Pvu9g1808 539 Pfam PPR repeat 59 86 IPR002885 -
Pvu9g1808 539 PANTHER OS01G0545900 PROTEIN 3 536 - -
Pvu9g1808 539 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 3 536 - -
Pvu9g1808 539 TIGRFAM PPR: pentatricopeptide repeat domain 397 424 IPR002885 -
Pvu9g1808 539 TIGRFAM PPR: pentatricopeptide repeat domain 361 395 IPR002885 -
Pvu9g1808 539 TIGRFAM PPR: pentatricopeptide repeat domain 58 91 IPR002885 -
Pvu9g1808 539 TIGRFAM PPR: pentatricopeptide repeat domain 260 293 IPR002885 -
Pvu9g1808 539 TIGRFAM PPR: pentatricopeptide repeat domain 159 193 IPR002885 -
Pvu9g1808 539 Gene3D Tetratricopeptide repeat domain 1 114 IPR011990 GO:0005515
Pvu9g1808 539 Gene3D Tetratricopeptide repeat domain 378 539 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1808 Pvu-Chr9 25513037 25519775 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1808 16 537 Glycoside Hydrolase AT3G49170 30.566 1.75e-80 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1808 - - pvu:PHAVU_009G175100g 1076.23