Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1801 ATGTTGAGGCTTTACGTGTGTATTTTGGAGGCCAAGGACCTTCCCGTGAAGGATACATACGTAGAGCTTAGACTTGCCAAGTTCAAGGCCAAGACAAGGATTTTGACGAACAAGTGCACCCCCATTTGGAACCAGGAGTTTTGTTTCAGGGTGCATGATGCTGAGGACGTGCTCCTTGTGTCTGTTGTTAGTCATGTGAATGAGTGCAGGGTGACCAATGGTTATGTGGGTTTCGTGGGTGAGGTACGGATACCTGTAGCCTCAATTGCTTTTGAGGATAAGCAAACCTTGCTGCCCACCTGGTTCTCTCTTCAAAGCCCCAAGAGTGGAAAATTTTTCAATAAATATTGCGGGAAAATTCTCCTTACTGTTTCTCTTCATGGTAAATGCTGTGCTTCTTTTACCAAGCATAAGCATCCTCCAAATTCAACTTTTGCAGTTGAGAACTCAAAAGACTTGGAATGTCTTCACACTTCATGTCGGGCACCTTGTGATAAAATGGGCCTAGGCAAACAGTTGAAGGTTATTGCTAATGTTGTGCATAAGATTTTCAAAAAGAAAGAAGGAAACTCAAAGACCGGGGATTCTTCAGAACTATCCACTATGTTATCTGATTGTGAAGATAGTGTTCAGGAAGATTCATCTCCTTGCAGCTTTGAAGAAGCCCTTGCACTAATGGAATCAGGAGATAGCAAACCTGAGATGCCTGAAAATTTGTCTGGCGGTGTTTTAGTAGACCAGATTTATTTAGTCTCTCCAAGTGACCTTAATGTGTTTCTTTTTGCACCCAATTCACAGTTTCGTAAAGATTTGGCTGAACTGCAGGGAACAACAAATGTGCAAGAGGGACCTTGGACATGGAAAAATGGAGACATGTCAAGTTTAACACGAGTTGTTTCCTATACAAAAGCTGCAACAAAATTGATTAAGGCAGTCACTGCCACTGAGGAGCAAAAGTACATTAGAGTGTGTAGAAAGGAATTTGCTATACTTGTTAGTGTAAGTACACCAGAGGTCCCATATGGGAATACATTTAGGATTGAATTTCTTTACAAGATAATGCCTGGTGGAGAGGTATCTTCAGGAGAGGAATCCTCCCATCTTGTTGTGTCATGGAGCATTGTCTTCCTCCATAGCACAATGATGAAAAGCATGATAGAAAGTGGGGCAAGACAGGGTTTGAAGGAGAGTTTTAGCCTGTTCTCCGAAAAACTAGCGCAGAATTTTAAGGTGCAAAATAAGGCAAATTTTTCAGACAAGGAACATTTTTTAGCAACTTTGCAAACTGAAGACCAGTGGCATTGGTGGCAGGCAATTACATACTTTTGTAATTTCACTGTGGTTTCTACCATTTTCATGTGTTTGTATGTGGTGGTGCATATTCTATATTGTGGTCCAAGTCTACCCCAGGGCTTGGAATTTAAGGGTCTTGAATTGCCAGATAGTTTTGGGGAACTCATTATAAGTGGAGTTTTAATCACCCAGTTGCAGCGTGTTTATAATATGCTGTCTCACTTTGTTCAAGCAAGATTTCAAATGGGAACTGACCATGGCCTCAAAGCTCATGGTGTTGGATGGGTTCTTACAGTGGCTTTAATTGAGGGGGTTGACTTGGCCTCCTTGGAATCAGAAGGGTTGTCAGATCCCTATGTAGTTTTCACTTGTAATGGACAAACAAGATCAAGCTCTGTCAAGCTTCAAACGTCGAATCCTCAATGGAATGAAATATTAGAGTTTGATGCTATGGAAGAACCACCATCAGTTTTGGATGTGGAAGTTTTTGATTTTGACGGTCCATTTGACCAGGATGTTTCACTTGGACATGCTGAGATCAATTTCCTAAAGCACACATCAACTGAGTTGGCAGACATGTGGCTCTTGCTCGAAGGAAAACTTGCTCAATCTTCTCAGTCAAAGTTGCACCTGAGAATTTTCTTGGACAATAATAAAGGAGTTGAGACAATCAAGGAATATTTGGAGAAGATGGAAAAGGAAGTAGGCAAAAAGTTGAATCTTACATCACCACAAAGGAATTCTACATTCCAGAAATTGTTTGCATTACCTCCGGAAGAATTTCTCATAAAAGATTTCACTTGTTACCTCAAGAGAAAAATGCCTTTACAGGGTCGACTGTTTCTTTCAGCACGGATTCTGGGGTTTCATGCCAATTTCTTTGGACACAAAACCAAATTTTTCTTCCTTTGGGAAGATATTGAAGAGATACAAGTGCTTCCTCCCTCATGGGCAACATTAGGAAGCCCTACATTGGTCATAATTCTGCGAAGAGGTCGAGGTCTTGATGCAAGGTACGGTGCAAAGACTCAAGATGAAGAAGGGAGACTTAGGTTTCATTTTCAATCATTTTCTTCATTTAGTGCTGCCTCCAGAACAATAAAGGCCTTGTGGAGAACAAGAATCCTAAACCCCTATCAGAGAGAACAAATTACCGAAGAACATGAAGATCAAGAAGGCTTTGTAATTCCAGAAGACTCTGCATCTATCTTAGAGAATGAAGAAAAAATGTCCAGAATTTTCTCTGCAGAACTACCAATCAAGATGATATCTGTGATGGGAATTTTTGGTGGAGGAAACCTGGAGCATAAAATTATGCAGAGAACAGGATGTATGAACTATGAAACTACCTCGTGGGAGCTAGTAAAACCTGATGTCTTCGAGAGGCGTGTTTCTTACCAATTCAATCGACAAGTGTCAGCTTTCGGAGGTGAAGTCACATGCACACAACAAAAATGCCAAAATGCAAACACTGGAGGTTGGACTGTGATTGAAGTTATGGCTCTTCATGGTGTCCCATTTGCTGATCACTTTCATATTCATCTTAGGTACGAAATTGAGAAATCATCTCTTGGTGAATGTGCTTGCAAGTGTGATGCTTACATTGGTGTTATGTGGCTTAAGAGCTCCAAGTTTCAGCAGAGGATCAACCGGAACATAATAGCCAAGTTTAACCTTCGGTTGAAGGAAATATTTGAACTGGCTCAGAAAGAGATTTTGCTTATGTCTCAGAACTCAAATGAATAA 3039 0.4084 MLRLYVCILEAKDLPVKDTYVELRLAKFKAKTRILTNKCTPIWNQEFCFRVHDAEDVLLVSVVSHVNECRVTNGYVGFVGEVRIPVASIAFEDKQTLLPTWFSLQSPKSGKFFNKYCGKILLTVSLHGKCCASFTKHKHPPNSTFAVENSKDLECLHTSCRAPCDKMGLGKQLKVIANVVHKIFKKKEGNSKTGDSSELSTMLSDCEDSVQEDSSPCSFEEALALMESGDSKPEMPENLSGGVLVDQIYLVSPSDLNVFLFAPNSQFRKDLAELQGTTNVQEGPWTWKNGDMSSLTRVVSYTKAATKLIKAVTATEEQKYIRVCRKEFAILVSVSTPEVPYGNTFRIEFLYKIMPGGEVSSGEESSHLVVSWSIVFLHSTMMKSMIESGARQGLKESFSLFSEKLAQNFKVQNKANFSDKEHFLATLQTEDQWHWWQAITYFCNFTVVSTIFMCLYVVVHILYCGPSLPQGLEFKGLELPDSFGELIISGVLITQLQRVYNMLSHFVQARFQMGTDHGLKAHGVGWVLTVALIEGVDLASLESEGLSDPYVVFTCNGQTRSSSVKLQTSNPQWNEILEFDAMEEPPSVLDVEVFDFDGPFDQDVSLGHAEINFLKHTSTELADMWLLLEGKLAQSSQSKLHLRIFLDNNKGVETIKEYLEKMEKEVGKKLNLTSPQRNSTFQKLFALPPEEFLIKDFTCYLKRKMPLQGRLFLSARILGFHANFFGHKTKFFFLWEDIEEIQVLPPSWATLGSPTLVIILRRGRGLDARYGAKTQDEEGRLRFHFQSFSSFSAASRTIKALWRTRILNPYQREQITEEHEDQEGFVIPEDSASILENEEKMSRIFSAELPIKMISVMGIFGGGNLEHKIMQRTGCMNYETTSWELVKPDVFERRVSYQFNRQVSAFGGEVTCTQQKCQNANTGGWTVIEVMALHGVPFADHFHIHLRYEIEKSSLGECACKCDAYIGVMWLKSSKFQQRINRNIIAKFNLRLKEIFELAQKEILLMSQNSNE* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1801 1012 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 128 IPR035892 -
Pvu9g1801 1012 Pfam VAD1 Analog of StAR-related lipid transfer domain 244 393 IPR031968 -
Pvu9g1801 1012 Pfam VAD1 Analog of StAR-related lipid transfer domain 844 985 IPR031968 -
Pvu9g1801 1012 Gene3D - 677 804 IPR011993 -
Pvu9g1801 1012 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 526 650 IPR035892 -
Pvu9g1801 1012 Pfam C2 domain 3 104 IPR000008 -
Pvu9g1801 1012 Pfam C2 domain 527 626 IPR000008 -
Pvu9g1801 1012 ProSiteProfiles C2 domain profile. 1 102 IPR000008 -
Pvu9g1801 1012 ProSiteProfiles VASt domain profile. 840 1003 IPR031968 -
Pvu9g1801 1012 CDD C2 528 628 - -
Pvu9g1801 1012 SMART gram2001c 679 745 IPR004182 -
Pvu9g1801 1012 ProSiteProfiles VASt domain profile. 240 413 IPR031968 -
Pvu9g1801 1012 CDD C2 4 104 - -
Pvu9g1801 1012 PANTHER BNAA05G37250D PROTEIN 2 1009 IPR044511 -
Pvu9g1801 1012 ProSiteProfiles C2 domain profile. 507 626 IPR000008 -
Pvu9g1801 1012 SMART C2_3c 527 626 IPR000008 -
Pvu9g1801 1012 SMART C2_3c 3 98 IPR000008 -
Pvu9g1801 1012 Pfam GRAM domain 681 762 IPR004182 -
Pvu9g1801 1012 PANTHER C2 AND GRAM DOMAIN-CONTAINING PROTEIN 2 1009 - -
Pvu9g1801 1012 Gene3D C2 domain 512 646 IPR035892 -
Pvu9g1801 1012 Gene3D C2 domain 1 128 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1801 Pvu-Chr9 25336514 25340961 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1801 1 139 Lipid Metabolism Gene Families AT1G22610 30.612 4.23e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1801 - - vun:114162777 1773.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1801 9 25336514 25340961 Pvu9g1801 9 25336514 25340961 ECH