Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1774 ATGGGCGGATCAATTTCAAAACGAAGGAGTTCTAGGCAACGTTCGTCCTCAAATTTTTTCCCTCGGTATCAATCGCCTTATTTGCCACAAAGCCAAGATCAAGGGTCTGTGAGGCATTACGGGTATTCATCCCAAAGCAATGGTGGTGGTCCTGCTCCAGAGCAAGGAAAGAGATCAGATGGGAAGTATTCAAGGATAGGTGATAATTATAAGAGCTTGGACCAGGTAACTGAAGCTTTAGCAAATGCTGGCCTAGAATCTTCTAATCTCATTGTTGGTATTGATTTTACCAAGAGCAATGAGTGGACAGGTGCAAGGTCATTTCAAAGGAGATGCCTGCATCACATTGGTCATGAACAAAATCCGTATGAACAAGCTATATCTATCATTGGGAAAACACTATCATCCTTTGATGAGGATAACTTAATTCCCTGTTTTGGTTTCGGAGATGCATCAACACATGATCAAGAAGTTTTTAGTTTCTATCCTGATGAGAGATTTTGTCAAGGATTTGAAGAAGTGTTGGGACGATATAGGGAATTGGTCCCTCAATTAAAGCTTGCAGGACCAACATCATTTGCTCCAGTCATTGAGATGGCAATCACTATAGTCGAGCAAAGTGGAGGCCAATACCATGTCTTAGTGATTATAGCCGATGGGCAGGTGACGAGAAGTGTTGACATTGAGCATGGGCAGTTGAGTGCACAAGAAAAGAAAACTGTAGAAGCTATTGTGAAAGCTAGTGAATATCCCTTGTCAATCATATTAGTTGGAGTTGGAGATGGGCCGTGGGATATGATGAAACAATTTGACGATAACATCCCTGCCCGAGCATTTGATAATTTCCAGTTTGTGAATTTCACAGAAATAATGTCGAAGAACATGGATCGGTCCAGAAAGGAAACTGAGTTTGCACTGGCGGCCTTGATGGAAATACCCTCCCAGTACAAGGCAACACTAGAGCTTAATACATTGGGCACTCGAAGCGGGAAAGATGTCGACAGGGTTCCTCTGCCACCCCCTCTATATGGTGCAGCATCTTTCAATTCCCCGAAAACATCCCGTCAGAACAGTTTTCGTCCCAGTGCACCATCTAGCAGACATGATGTTCGTTCGAATCCTCCCGCAACTTCTGCTTCTGATAATCAGGTTTGTCCCATTTGCCTCACCAATCCTAAGGATATGGCTTTTGGTTGCGGGCATCAGACATGCTGTGAGTGTGGACAAGATCTTGAATTGTGCCCCATTTGCAGGAGTACCATTGATACTAGAATAAAACTTTATTAG 1287 0.4336 MGGSISKRRSSRQRSSSNFFPRYQSPYLPQSQDQGSVRHYGYSSQSNGGGPAPEQGKRSDGKYSRIGDNYKSLDQVTEALANAGLESSNLIVGIDFTKSNEWTGARSFQRRCLHHIGHEQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDERFCQGFEEVLGRYRELVPQLKLAGPTSFAPVIEMAITIVEQSGGQYHVLVIIADGQVTRSVDIEHGQLSAQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMKQFDDNIPARAFDNFQFVNFTEIMSKNMDRSRKETEFALAALMEIPSQYKATLELNTLGTRSGKDVDRVPLPPPLYGAASFNSPKTSRQNSFRPSAPSSRHDVRSNPPATSASDNQVCPICLTNPKDMAFGCGHQTCCECGQDLELCPICRSTIDTRIKLY* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1774 428 Pfam Zinc finger, C3HC4 type (RING finger) 382 423 - -
Pvu9g1774 428 MobiDBLite consensus disorder prediction 1 52 - -
Pvu9g1774 428 PANTHER RING-FINGER PROTEIN 1 428 - -
Pvu9g1774 428 SMART VWA_4 87 290 IPR002035 -
Pvu9g1774 428 MobiDBLite consensus disorder prediction 342 380 - -
Pvu9g1774 428 CDD RING-HC_RGLG_plant 384 428 IPR045317 GO:0061630|GO:0070534
Pvu9g1774 428 MobiDBLite consensus disorder prediction 347 380 - -
Pvu9g1774 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 364 428 IPR013083 -
Pvu9g1774 428 ProSiteProfiles Zinc finger RING-type profile. 385 418 IPR001841 -
Pvu9g1774 428 SUPERFAMILY vWA-like 88 271 IPR036465 -
Pvu9g1774 428 SUPERFAMILY RING/U-box 379 424 - -
Pvu9g1774 428 Pfam Copine 112 326 IPR010734 -
Pvu9g1774 428 PANTHER COPINE FAMILY PROTEIN 1 1 428 - -
Pvu9g1774 428 MobiDBLite consensus disorder prediction 1 66 - -
Pvu9g1774 428 CDD vWA_copine_like 66 316 IPR010734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1774 Pvu-Chr9 25041313 25045303 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1774 K16280 - gmx:100809850 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1774 9 25041313 25045303 Pvu9g1774 9 25041313 25045303 ECH