Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1746 ATGCTCACTCCCCCAATGCTCAAATCATCCTTCACTCCCCTTTTCTGGGTGCTAAACCCTAAACCCAAATCTCAAAAACTTCCCTCCCACCTATTCGCCAAAACCTTCTTCACTAACACCACGCCACCTGTTCGACACAATGCCTCTCTCAACCTCCCCACCCTACCACCCGCTTCCTCCGCCTACATCCACCTCCCTTTCTGCCGGAAACGCTGCCACTATTGCGACTTCCCCATCGTAGCTCTCGGCTCCGCCTCAACCCAAACCCACCACGACCCTCGCGTCTCCAACTACATCCACTGGCTCTGCCGGGAAATCACCGCCACCAAAGTGGATCAACCCGCTTCCACCACGCCCCTCCAGACTGTCTACTTTGGCGGTGGGACACCCTCGCTGGTGCCTCCTGCGATGGTTTCATCCATTTTGGAGGCTCTGAGAGTGAAGTTTGGGCTTTGTGAGGACGCGGAAATATCGATGGAGATGGACCCCGGCACCTTTGATGCTGAGAAGATGAGGGGGATGATGGCGTTGGGGGTGAATAGAGTGTCTTTGGGAGTGCAGGCGTTTCAGGAGGAGCTGTTGAGAGCGTGTGGCAGGGCACATGGGGTGCAAGAGGTTCATGAGGCTATTGGTGTTGTGAAGTCGTGTGGGGTTGACAATTGGAGTGTTGATCTCATAGCTTCGTTGCCTCATCAGAGCTGTGAGATGTGGGAGGAAAGTTTAAGGCTCACCATTGAGTCGCAACCTTCTCATGTGTCTGTTTATGACTTGCAAATTGAGCAAGGAACAAAATTTGGACGATTGTACTCACCAGGGGAATTTCCGATGCCTTCTGAAGCACAATCGGCTGAGTTCTATAAGATGGCTTCAAGAATGCTTTCTGATGCGAATTACAACCATTATGAAATCAGCAGCTACTGCAAGAGTGGGTACGAGTGCAAACACAACTTTGTCTACTGGAAGAACGAGCCTTTCTATGCTTTTGGCCTTGGCTCTGCCAGTTTTGTTGGTGGGTTGAGGTTTTCAAGACCAAGGAAGGTCAATGATTACATCAATTTTGTGCAGAATCTGGAAAATGGATTAGTAGATATCTCTGGTGGTGATGGTAACACTCATGGCAAGGACACCGCCATGGATGTGGTGATGCTGTCCCTAAGAACTGCACAAGGCCTAGACTTAAAGAGTTTCCAAGAATCATTTGGCAGCTCTGTTGTTTTGTCTTTGCTAGAGGCTTATAAGCCTTATGTTGAGAGTGGGCTTGTGGTTTGCTTGGACGAGCATAGGAGAACCATTATAGTAGATGACCTTAACAATTCTTTTTTGTATAAAACTAACACAGAAAAGAGGGTGGCTTACATAAGGCTAAGTGATCCAGAAGGTTTCCTCTTGTCAAATGAGTTGATAGCCCTTGCTTTTGGGGTTATTGACTCTTGGAAGGATTGCCCTCCATATCAAGAAGCAAAAGCCGCCACTTGA 1476 0.4878 MLTPPMLKSSFTPLFWVLNPKPKSQKLPSHLFAKTFFTNTTPPVRHNASLNLPTLPPASSAYIHLPFCRKRCHYCDFPIVALGSASTQTHHDPRVSNYIHWLCREITATKVDQPASTTPLQTVYFGGGTPSLVPPAMVSSILEALRVKFGLCEDAEISMEMDPGTFDAEKMRGMMALGVNRVSLGVQAFQEELLRACGRAHGVQEVHEAIGVVKSCGVDNWSVDLIASLPHQSCEMWEESLRLTIESQPSHVSVYDLQIEQGTKFGRLYSPGEFPMPSEAQSAEFYKMASRMLSDANYNHYEISSYCKSGYECKHNFVYWKNEPFYAFGLGSASFVGGLRFSRPRKVNDYINFVQNLENGLVDISGGDGNTHGKDTAMDVVMLSLRTAQGLDLKSFQESFGSSVVLSLLEAYKPYVESGLVVCLDEHRRTIIVDDLNNSFLYKTNTEKRVAYIRLSDPEGFLLSNELIALAFGVIDSWKDCPPYQEAKAAT* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1746 491 SFLD anaerobic coproporphyrinogen-III oxidase like 59 425 - -
Pvu9g1746 491 SMART MiaB 58 288 IPR006638 GO:0003824|GO:0051536
Pvu9g1746 491 PANTHER COPROPORPHYRINIGEN III OXIDASE 7 474 IPR034505 -
Pvu9g1746 491 SUPERFAMILY Radical SAM enzymes 50 428 - -
Pvu9g1746 491 Gene3D tm_1862 like domain 66 295 IPR023404 -
Pvu9g1746 491 SFLD HemN-like, clustered with heat shock genes 59 425 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Pvu9g1746 491 ProSiteProfiles Radical SAM core domain profile. 53 296 IPR007197 GO:0003824|GO:0051536
Pvu9g1746 491 PANTHER RADICAL S-ADENOSYL METHIONINE DOMAIN-CONTAINING PROTEIN 1, MITOCHONDRIAL 7 474 - -
Pvu9g1746 491 TIGRFAM hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 60 422 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Pvu9g1746 491 Pfam Radical SAM superfamily 63 243 IPR007197 GO:0003824|GO:0051536
Pvu9g1746 491 CDD Radical_SAM 68 286 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1746 - K07739 pvu:PHAVU_009G169000g 1006.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1746 9 24661078 24663076 Pvu9g1746 9 24661078 24663076 ECH