Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1718 ATGAGAGCTCCATTCAAGCACACCAAGAAGAAAAATGATCTCTTTGAATGCCTTCCCGATGATCTAGTGGTTTTCATTCTCTCCAAACTCAGCTCCACCGCTTCCTCCCCTTCCGATTTCATAAACACCGTCTTAACATGCAAGAGATTAAACCGGTTAGGCCTGCACCGTCTTGTGTTATCCAAAGCTGGGTCTAAAGTGTTCTCCATAAAGCCCAGAAATTGGTCGGAAAAGACTCACACTTTCCTCAAACACTGCGTTAACGCCGGCAACGTCGACGCCTGCTACACTCTCGGAATGATCCGATTTTACTGTCTGGAAAACCGAGGGAGCGGGCTTTCGTTGATGGCGAAGGCGGCTATGAAGCTGCATGCGCCGGCTCTGTACTCGCTGGCGGTGATACAGTTCAATGGCAGCGGCGGCTCCAAACACGACAAGGATCTACGCGCTGGCGTGGCTCTGTCGGCGCGTGCGTCGCTGCTGGGCCACATCGACGCGCTTCGGGAGTTGGGCCATTGTCTCCAGGACGGTTACGGCGTGCGGCAGAACGTTGCGGAGGGGAGGCGGATGCTGGTGCAGGCGAACGTGCGGGAGCTGGCGTATGTGCTACGCGAGGTGACTCCTTCTGCTTCTGAATCTCTCATGGTGACGTGGCGGACGCCAATGACGTGTCAGAGAGATGTCACAGCGTTGTTGAGTGACTACGGTTACAGAATTCCGGTGCCGGAAGTGCAACCGGTGAATCGTTTTTTGAGGGAGTGGTTTGAATCCGGTAAAGGAAAATTGGAGGAAGGATTGAGGTTGTGTTCCCACATTGGATGTGGCCGACCGGAAACTCGGCCGCAGGAATTTCGACGCTGTTCTGTTTGTGGAAAAGTTAATTATTGCTCACGTGGATGTCAAGCCATGGATTGGAAGTTAAAGCATAAAATGGAGTGTTCGCCCACTGAACCCTACGCCGAAGGAGATGCTGGCGTAGACCTAAATAACGAGTTTGCCATACCAAACGATGCCGTTTGA 1020 0.5275 MRAPFKHTKKKNDLFECLPDDLVVFILSKLSSTASSPSDFINTVLTCKRLNRLGLHRLVLSKAGSKVFSIKPRNWSEKTHTFLKHCVNAGNVDACYTLGMIRFYCLENRGSGLSLMAKAAMKLHAPALYSLAVIQFNGSGGSKHDKDLRAGVALSARASLLGHIDALRELGHCLQDGYGVRQNVAEGRRMLVQANVRELAYVLREVTPSASESLMVTWRTPMTCQRDVTALLSDYGYRIPVPEVQPVNRFLREWFESGKGKLEEGLRLCSHIGCGRPETRPQEFRRCSVCGKVNYCSRGCQAMDWKLKHKMECSPTEPYAEGDAGVDLNNEFAIPNDAV* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1718 339 Pfam MYND finger 274 313 IPR002893 -
Pvu9g1718 339 SUPERFAMILY HIT/MYND zinc finger-like 267 316 - -
Pvu9g1718 339 Gene3D - 258 317 - -
Pvu9g1718 339 Gene3D Tetratricopeptide repeat domain 70 219 IPR011990 GO:0005515
Pvu9g1718 339 ProSiteProfiles Zinc finger MYND-type profile. 271 313 IPR002893 -
Pvu9g1718 339 SUPERFAMILY F-box domain 10 64 IPR036047 GO:0005515
Pvu9g1718 339 SUPERFAMILY HCP-like 78 194 - -
Pvu9g1718 339 PANTHER MYND DOMAIN-CONTAINING 6 327 IPR044508 -
Pvu9g1718 339 PANTHER HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEIN 6 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1718 Pvu-Chr9 24314407 24315827 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1718 - - gmx:100781713 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1718 9 24314407 24315827 Pvu9g1718 9 24314407 24315827 ECH