Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1562 ATGGAATCCCACAAAACAACCTTTCCAGCTCTGCTTCTCGCCACCTGCAAGCGACCCTCCTTCGCCCTCATCTTCCTCCTCTTCACCCTCCTCACCTTTCTCTCCCTCCACCTTCCCGTCAGGCCCGTTTGGCTCCTTGCGGCTCCCCACCCTCCGCCCCATCCCACAACATGCGCCGCCTTCTTCCGCCACGGGCCGCCCAGGAAGGTCGTCAGGTCCATCCAGGACTTCGGCGGCGTCGGCGACGGCACCACTTCCAACACTGAATCGTTCCGGAGGGCGATTCTGTACATGCAGCGCTTCCAGAACCGCGGTGGGGGCCAGCTGAATATCCCCGCTGGAACCTGGCTCACCGGCAGTTTCAATCTCACCAGTAATTTCACGCTTTTTCTTCAACACGGTGCCGTTATTCTCGCTTCACAGGACCCGAAAGAATGGCCGATAATTGAGGCATTGCCATCTTATGGAAGAGGGAGAGAGAGGCTTGGAGGAAGGCATATTAGCCTTATTCATGGAAATGGCATTAGTAATGTTGTTATTACAGGACAAAATGGGACAGTTGATGGTCAAGGAAAGATGTGGTGGGAACTTTGGTGGAACAGAACATTGGAGCATACAAGAGGGCACCTCCTTGAACTAATGAACTCGGATAATGTTCTCATATCAAACCTCACCTTTCGAAATTCTCCTTTTTGGACTATCCATCCTGTTTACTGCAGAAATGTTGTGATCAAAGGGATGACAATCTTGGCCCCCCTTAATGCTCCTAATACTGATGGCATAGACCCAGACTCAAGTTCAAACGTATGTATTGAAGATAACTACATAGAAAGTGGGGATGATCTCGTTGCCATTAAGAGTGGTTGGGATCAATATGGAATCACGGTGGCACATCCTTGCACAAATATTATAGTGAGGAGAATATCAGGCACTACCCCCACTTGTTCGGGAGTAGGCATAGGTAGTGAAATGTCTGGCGGAATTTCAAATATCACAATTGAGAATTTGCATGTGTGGGATTCTGCAGCTGGTGTTCGGATAAAATCAGACAAAGGCAGAGGAGGCTATGTAGCTAATGTTTCTATAAGTGATATAAGAATGGAGAGAGTCAAGATACCCATTAGGTTCAGTAGAGGTTCAAATGACCATCCTGATGATGGGTGGGATCCAAAAGCTGTTCCTATATTCAAAGATATTTTGGTAAGTAATGTGGTCAGTATAAATTCAACAAAAGCCCCAGTTTTGGAAGGTGTAGAGGGTTCATCATTTGAAGGCTTATGCTTCAAAAACATTACCCTGCATGGTGTAGCCTTATCCACAAGATGGCGTTGTGAATATATCTCTGGTTTTGCAACCGAGGTTTTCCCTGTTCCTTGTCTCGAGTTGCGGAACAATAGCTATTCATCCTGGTGTTCACCTTCCTGA 1425 0.4744 MESHKTTFPALLLATCKRPSFALIFLLFTLLTFLSLHLPVRPVWLLAAPHPPPHPTTCAAFFRHGPPRKVVRSIQDFGGVGDGTTSNTESFRRAILYMQRFQNRGGGQLNIPAGTWLTGSFNLTSNFTLFLQHGAVILASQDPKEWPIIEALPSYGRGRERLGGRHISLIHGNGISNVVITGQNGTVDGQGKMWWELWWNRTLEHTRGHLLELMNSDNVLISNLTFRNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSSNVCIEDNYIESGDDLVAIKSGWDQYGITVAHPCTNIIVRRISGTTPTCSGVGIGSEMSGGISNITIENLHVWDSAAGVRIKSDKGRGGYVANVSISDIRMERVKIPIRFSRGSNDHPDDGWDPKAVPIFKDILVSNVVSINSTKAPVLEGVEGSSFEGLCFKNITLHGVALSTRWRCEYISGFATEVFPVPCLELRNNSYSSWCSPS* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1562 474 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 13 472 - -
Pvu9g1562 474 SMART pbh1 216 238 IPR006626 -
Pvu9g1562 474 SMART pbh1 300 322 IPR006626 -
Pvu9g1562 474 SMART pbh1 266 298 IPR006626 -
Pvu9g1562 474 SMART pbh1 239 265 IPR006626 -
Pvu9g1562 474 SMART pbh1 357 378 IPR006626 -
Pvu9g1562 474 SMART pbh1 328 349 IPR006626 -
Pvu9g1562 474 Gene3D - 61 449 IPR012334 -
Pvu9g1562 474 SUPERFAMILY Pectin lyase-like 64 463 IPR011050 -
Pvu9g1562 474 PANTHER PECTIN LYASE-RELATED 13 472 - -
Pvu9g1562 474 Pfam Glycosyl hydrolases family 28 168 448 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1562 Pvu-Chr9 21974275 21978063 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1562 1 462 Glycoside Hydrolase AT4G33440 65.880 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1562 - - vra:106780727 899.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1562 9 21974275 21978063 Pvu9g1562 9 21974275 21978063 ECH