Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1561 ATGAAGATAAAATCCCATTCTTCCTTCTTCCTCGTGTTTCTTGTAGCCATTACTAACACACATGTTTGTTTAGCTGAATGTGATAACGTGAAAGACTATTGCCCTACAAGTACTCAACCCCAAAAGCAAGCCATATTCATCAATGGCCTCTCCTGTGAGAACCCAGATAGCACAAGTGCCCATGATTTCAAGAGCCAAGAACTAAGCAAATCTGGTTCCAGGGACGATTTTGGTTCGTTAGTTAAAATTGTCACTGCTTCCAAGTTTGTGGGGCTCAACACTCTTGGCCTTGCAATTGGTAGAAGTGACATTGAAGTGGATGGGCTTGTGAACCTCCACAACCACCCCAGAGCCACTGAGATGATCTATGTGAACCAAGGTAGGTTGCTGGCTGCGTTTCTCAACACCCAAAACCAGCTCTTCCAAAAGACTCTCAATGCTGGTGACGTCTTTGTCATCCCCAAGGGCTTGTTCCATTTCTTCCTCAACCGTGGTGAACAAGTTGCAACTTTGTTCTCAGTTTTCAACAGCCAAAATCCAGGGCTAGAATCACTCTCCTCCCTACCCTCTGAATCTGAGAACACACTGGAATCAGTTCAGAAGATAAAGATAAAACTCAATTCACTCTCTCATTCACAACTTCATGGTGATAGTGATTTGACTTCGGCAGTGCTGGATATCATTTATGACCATTAG 696 0.4382 MKIKSHSSFFLVFLVAITNTHVCLAECDNVKDYCPTSTQPQKQAIFINGLSCENPDSTSAHDFKSQELSKSGSRDDFGSLVKIVTASKFVGLNTLGLAIGRSDIEVDGLVNLHNHPRATEMIYVNQGRLLAAFLNTQNQLFQKTLNAGDVFVIPKGLFHFFLNRGEQVATLFSVFNSQNPGLESLSSLPSESENTLESVQKIKIKLNSLSHSQLHGDSDLTSAVLDIIYDH* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1561 231 Pfam Cupin 78 193 IPR006045 -
Pvu9g1561 231 CDD cupin_OxOx 28 181 - -
Pvu9g1561 231 SUPERFAMILY RmlC-like cupins 74 187 IPR011051 -
Pvu9g1561 231 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 4 12 215 - -
Pvu9g1561 231 SMART Cupin_1_3 66 208 IPR006045 -
Pvu9g1561 231 Gene3D Jelly Rolls 25 212 IPR014710 -
Pvu9g1561 231 PRINTS Germin signature 113 133 IPR001929 GO:0030145
Pvu9g1561 231 PRINTS Germin signature 143 163 IPR001929 GO:0030145
Pvu9g1561 231 PRINTS Germin signature 176 191 IPR001929 GO:0030145
Pvu9g1561 231 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 12 215 - -
Pvu9g1561 231 ProSitePatterns Germin family signature. 108 121 IPR019780 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1561 Pvu-Chr9 21968209 21968904 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1561 29 191 Miscellaneous Gene Families AT5G20630 36.842 6.99e-32 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1561 - - var:108332215 398.282