Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1545 ATGAATTCTTCAATCGCAAACACCATCGATTGGCTCCAACTCCCAAAGCCCTTCTTCCCTTCCAAAACCCATTTCCCCCAATTTTCCATCTATTCACCTCGCTTTCTCACTAATGCATTCCCCCCTCGCAACTTCACAAATCGATGCAAACTCAGAATCAACGCTTCCAATTCTCTTTCCGACACACCCAACAAAGAGCAAGAGCAAGAACAAGACGCTGAATCCGCGCAACTATTCGAGAAACTGAAGGAGGCGGAAAGGAAGAGAATGGATGAGTTGGAAGAGCTTGACAAGAAGGCGAACGTGCAGTTAGAGAGGCAGCTTGTGATGGCTTCTTCGTGGAGCAGAGCTCTGTTGACTATGCGTGGAAAACTCAAGGGGACTGAGTGGGATCCTGAAAACTCACACGGGATAGAGTTCAGCGATTTTTTGAGACTTCTTGACTCTAATAATGTACAGTTTATGGAGTACTCTAATTACGGTCAAACAGTATCAGTTGTTCTACCATATTACAAAAATGGGACAGTGATAGGAACTGAAGGGAATCCTGAGGATATTATTTTTCGGCGTCATCCAGTCAATCGAATGCCAATTGATAGTTGGAATGACGTATGGAGAAAATTACATCAGCAAATTGTAAATGTTGATGTCATTAATGTGGATGCTGTGCCTGCTGAAATATACTCAACTGTTGCAGTTGCTGTCATATGGTCTATGCGTCTTGCTCTGGCTGTTGGTTTTTATGTGTGGATCGATAATTTGATGAGACCAATATATGCAAAGTTGATACCTTGTGATTTGGGAACTCCTAGCCAAACGACTAGCCAGCCACTCCGAAGTCGTGCTCTTGGATCTCTAGGACAGAGTCGGGCTAAATTTATATCCGCAGAAGAAAGAACTGGTGTTACATTTGATGATTTTGCTGGCCAGGAATATATAAAAAAAGAACTACAAGAGATTGTTCGAATTTTAAAGAATGACGATGAGTTTCAAGACAAAGGAATTTATTGTCCAAAAGGTGTACTTCTTCATGGGCCTCCTGGAACTGGTAAAACCCTACTGGCCAAAGCCATTGCAGGTGAAGCAGGATTGCCTTTCTTTGCAGCCAATGGCACAGATTTTGTAGAGATGTTTGTAGGGGTTGCTGCATCCCGTGTTAAGGACCTCTTTGGAAATGCAAGATCATTTTCACCTTCTATAATCTTTATTGATGAGATAGATGCTATTGGTAGCAAACGTGGAGGACCTGATATTGGTGGAGGAGGTGCTGAAAGGGAGCAAGGTTTACTTCAGATACTGACTGAGATGGATGGATTCAAAGTTTCCACAGCACAAGTGCTCGTTATAGGAGCCACAAATAGGTTGGATATTCTTGATCCTGCTCTATTGAGGAAGGGTCGTTTTGACAAGATCATCAGAGTAGGTTTGCCATCCGAGGATGGAAGATATGCCATTTTGAAGGTGCATGCTAGGAATAAATTTTTTCGCTCAGAGGAGGAAAAACATACATTACTGAAGGAAATTTCCGAGCAGACCGAAGATTTTACTGGGGCAGAGCTACAAAATATACTGAATGAAGCTGGAATTTTGACAGCTAGGAAGGATTTGGATTACATTGGACGAGATGAACTGCTTGAGGCATTAAAAAGGCAAAAAGGAACATTTGAAACTGGGCAAGAGGATAGTACTGATATTCCAGAAGAATTAAAACTGAGATTGGCATACAGAGAAGCAGCTGTTGCTGTTCTTGCATGTTATTTTCCTGAGCCCCACCGTCCTTTTGTAGAGACTGATATAAGTTCCATCCGTAGCCAGCCAAATATGCGTTATACTGAAATTTCTGGTCAGGTTTTTGCAAGGAAATCAGATTACATAAACTCTATAGTGCGTGCTTGTGCTCCAAGAGTAATTGAGGAGGAGATGTTTGGGATTGACAACATGTGTTGGATCTCTGCAAAGGCAACATTAGAAGCTTCAAGGCGTGCAGAGTTTTTAATTCTGCAGACAGGAATGACTGCCTTTGGGAAAGCATATTACAAAAACTATAGTGATCTTGTGCCCAATCTTGCAATGAAGCTTGAAGCACTTCGAGATGAGTATATGCGTTATGCTACAGAGAAGTGTTCATCGGTGCTACAAGAATACCATTTGGCAGTTGAAACAATCACAGATATTTTGCTTGAAAAGGGTAAAATCCAAGCTGAGGAGATTTGGGACATCTATAAGAGCGCTCCTCGTGTAGCTCAGCCTCCTGTCAGTCCAGTTGATGAATATGGAGCACTGATTTATGCTGGACGATGGGGAATCCATGGGATCAGTCTTCCTGGAAGGGTTACATTTGCCCCAGGCAACGTTGGATTTTCGACCTTTGGGGCACCTCGCCCTACAGAGACACAAATGGTTAGTGATGAAACTTGGAAACTAGTTGATGATATCTGGGATAAAAAGGTTCAAAACATTAAAGATGAAGCTACGAAGGTGATCGAAGAGGAGAAGGAAAACCCACAACTTTTAATGGCGAGCCATTTTCTTTGA 2535 0.4237 MNSSIANTIDWLQLPKPFFPSKTHFPQFSIYSPRFLTNAFPPRNFTNRCKLRINASNSLSDTPNKEQEQEQDAESAQLFEKLKEAERKRMDELEELDKKANVQLERQLVMASSWSRALLTMRGKLKGTEWDPENSHGIEFSDFLRLLDSNNVQFMEYSNYGQTVSVVLPYYKNGTVIGTEGNPEDIIFRRHPVNRMPIDSWNDVWRKLHQQIVNVDVINVDAVPAEIYSTVAVAVIWSMRLALAVGFYVWIDNLMRPIYAKLIPCDLGTPSQTTSQPLRSRALGSLGQSRAKFISAEERTGVTFDDFAGQEYIKKELQEIVRILKNDDEFQDKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVEMFVGVAASRVKDLFGNARSFSPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTAQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSEDGRYAILKVHARNKFFRSEEEKHTLLKEISEQTEDFTGAELQNILNEAGILTARKDLDYIGRDELLEALKRQKGTFETGQEDSTDIPEELKLRLAYREAAVAVLACYFPEPHRPFVETDISSIRSQPNMRYTEISGQVFARKSDYINSIVRACAPRVIEEEMFGIDNMCWISAKATLEASRRAEFLILQTGMTAFGKAYYKNYSDLVPNLAMKLEALRDEYMRYATEKCSSVLQEYHLAVETITDILLEKGKIQAEEIWDIYKSAPRVAQPPVSPVDEYGALIYAGRWGIHGISLPGRVTFAPGNVGFSTFGAPRPTETQMVSDETWKLVDDIWDKKVQNIKDEATKVIEEEKENPQLLMASHFL* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1545 844 ProSitePatterns AAA-protein family signature. 446 464 IPR003960 GO:0005524|GO:0016887
Pvu9g1545 844 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 550 IPR027417 -
Pvu9g1545 844 Gene3D Peptidase M41 559 746 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Pvu9g1545 844 CDD AAA 308 476 - -
Pvu9g1545 844 PANTHER METALLOPROTEASE M41 FTSH 46 813 - -
Pvu9g1545 844 Coils Coil 68 103 - -
Pvu9g1545 844 Pfam ATPase family associated with various cellular activities (AAA) 341 475 IPR003959 GO:0005524|GO:0016887
Pvu9g1545 844 SMART AAA_5 337 478 IPR003593 -
Pvu9g1545 844 PANTHER INACTIVE ATP-DEPENDENT ZINC METALLOPROTEASE FTSHI 4, CHLOROPLASTIC-RELATED 46 813 - -
Pvu9g1545 844 Gene3D - 286 475 IPR027417 -
Pvu9g1545 844 Pfam AAA+ lid domain 505 545 IPR041569 -
Pvu9g1545 844 SUPERFAMILY FtsH protease domain-like 566 747 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Pvu9g1545 844 Gene3D - 477 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1545 Pvu-Chr9 21825072 21836000 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1545 242 585 Miscellaneous Gene Families AT3G47060 42.442 1.74e-66 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1545 - - gmx:100804743 1547.33