LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu9g1509	ATGGCACTTCCATCCACATTCTCCGCTGCAAAATTTGAGCCCATCTTCCTCAAATCCTCTTCTTCCTCTTCCTCGCAATTTCCTTCAAGGACGTTACACACCGCTTTTCTTCCCCATAACAGAAGAACCTTCCTTCGGAGAGGGGTTGTTCGCTGCGACGCTCAGCCCTCTGATGCATCGGTTGCTCCCAATAATGCTACCTCTCTCTCCCCTCTTGAGCAGCTCAAGACTTCTGCTGCTGATAGGTATACAAAGGAAAGGAACAGCATTATTGTCATTGGGCTCAGTGTGCACACTGCACCTGTGGAAATGCGTGAAAAACTTGCCATTCCAGAAGCAGAATGGCCTAGAGCTATTGCAGAGCTGTGTAGTCTTAATCATATTGAAGAAGCAGCTGTTCTGAGCACCTGCAACCGAATGGAGATATATGTTCTTGCAGTGTCCCAACATCGTGGTATCAAAGAAGTCATGGAATGGATGTCAAAAACAAGTTCTGTCCCTGTTTCAGAGCTAAGCCAGCACCAGTTTTTACTTTACAACAATGATGTCACACAACATCTTTTTGAAGTATCAGCTGGTCTTGATTCTCTTGTTTTGGGAGAAGGTCAAATCCTTGCTCAGGTTAAGCAAGTTGTTAAAGTTGGACAAGGAGTTAACGGCTTTGGGAGAAACATCAGTGGGCTATTCAAGCATGCAATTACTGTTGGTAAAAGGGTTAGAACTGAGACTAACATTGCTTCCGGGGCAGTTTCTGTGAGCTCAGCTGCTGTTGAGTTGGCCTTTATGAAACTACCTGAAGCCTCACTTGATAATGCCAGGATGTTGGTTATTGGAGCTGGAAAGATGGGAAAGCTTGTGATCAAACATTTGGTGGCAAAAGGTTGCAAAAAGATGGTTGTTGTCAACAGAACTGAGGAGAGAGTTGCTGCAATACGCGAAGAACTGAAGGATATTGAAATCATCTACAAGCCCCTTTCAGAAATGCTCACCTGTGCCGGTGAAGCTGATGTAGTTTTCACCAGTACTGCATCAGAAACCCCATTATTCTTGAAAGGTCATGTCAAAGATCTTCCTCCTGCAAGTCAAGATGTTGGAGGCCATCGCTTTTTCATTGATATCTCTGTTCCCCGGAATGTGGGTTCATGTGTCTCAGACCTTGAGTGTGTGCGAGTTTACAATGTTGATGACCTTAAAGAGGTTGTGGCTGCCAATAAAGAGGATCGCCTAAGAAAAGCAATGGAAGCACAGACAATCATTGCTGAAGAATCTAAGCAATTCGAAGCTTGGAGGGACTCGCTGGAAACTGTCCCTACTATTAAAAAATTGCGGGCTTATGCGGAAAGAATCCGGCTCGCTGAGCTTGAGAGATGCTTATCTAAGATGGGTGATGATATACCTAAAAAAACTCGGAGGGCTGTGGATGATCTTAGTCGGGGTATAGTGAATAAGTTGCTTCATGGTCCAATGCAACATTTAAGGTGCGATGGGAATGACAATCGGACTCTTAGTGAGACACTGGAGAACATGCATGCTTTGAATAGAATGTTCAACCTTGAAACTGAGATATCTGTTTTGGAGCAAAAGATTCGAGCGAAGGTAGAACAAAACCAGAAATGA	1617	0.4428	MALPSTFSAAKFEPIFLKSSSSSSSQFPSRTLHTAFLPHNRRTFLRRGVVRCDAQPSDASVAPNNATSLSPLEQLKTSAADRYTKERNSIIVIGLSVHTAPVEMREKLAIPEAEWPRAIAELCSLNHIEEAAVLSTCNRMEIYVLAVSQHRGIKEVMEWMSKTSSVPVSELSQHQFLLYNNDVTQHLFEVSAGLDSLVLGEGQILAQVKQVVKVGQGVNGFGRNISGLFKHAITVGKRVRTETNIASGAVSVSSAAVELAFMKLPEASLDNARMLVIGAGKMGKLVIKHLVAKGCKKMVVVNRTEERVAAIREELKDIEIIYKPLSEMLTCAGEADVVFTSTASETPLFLKGHVKDLPPASQDVGGHRFFIDISVPRNVGSCVSDLECVRVYNVDDLKEVVAANKEDRLRKAMEAQTIIAEESKQFEAWRDSLETVPTIKKLRAYAERIRLAELERCLSKMGDDIPKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGNDNRTLSETLENMHALNRMFNLETEISVLEQKIRAKVEQNQK*	539

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu9g1509	538	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	248	408	IPR036291	-
	Pvu9g1509	538	PANTHER	GLUTAMYL-TRNA REDUCTASE	1	538	-	-
	Pvu9g1509	538	Gene3D	-	249	401	-	-
	Pvu9g1509	538	Hamap	Glutamyl-tRNA reductase [hemA].	89	516	IPR000343	GO:0008883\|GO:0033014\|GO:0050661
	Pvu9g1509	538	SUPERFAMILY	Glutamyl tRNA-reductase catalytic, N-terminal domain	89	245	IPR036343	GO:0008883\|GO:0033014\|GO:0050661
	Pvu9g1509	538	Pfam	Glutamyl-tRNAGlu reductase, dimerisation domain	414	518	IPR015896	GO:0008883\|GO:0033014\|GO:0050661
	Pvu9g1509	538	Pfam	Shikimate / quinate 5-dehydrogenase	259	400	IPR006151	-
	Pvu9g1509	538	TIGRFAM	hemA: glutamyl-tRNA reductase	90	500	IPR000343	GO:0008883\|GO:0033014\|GO:0050661
	Pvu9g1509	538	SUPERFAMILY	Glutamyl tRNA-reductase dimerization domain	412	501	IPR036453	GO:0008883\|GO:0033014\|GO:0050661
	Pvu9g1509	538	Coils	Coil	515	538	-	-
	Pvu9g1509	538	Coils	Coil	301	321	-	-
	Pvu9g1509	538	ProSitePatterns	Glutamyl-tRNA reductase signature.	186	209	IPR018214	GO:0008883
	Pvu9g1509	538	PANTHER	GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC	1	538	-	-
	Pvu9g1509	538	Gene3D	-	88	248	IPR036343	GO:0008883\|GO:0033014\|GO:0050661
	Pvu9g1509	538	CDD	NAD_bind_Glutamyl_tRNA_reduct	90	412	-	-
	Pvu9g1509	538	Pfam	Glutamyl-tRNAGlu reductase, N-terminal domain	93	243	IPR015895	GO:0008883\|GO:0033014\|GO:0050661

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu9g1509	Pvu-Chr9	21376089	21379143	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu9g1509	K02492		-	gmx:100782247	930.243

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu9g1509	9	21376089	21379143	Pvu9g1509	9	21376089	21379143	ECH