Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1499 ATGGATTTAGTGGTATCACCCGAACAGTTTTGTTCATTTCACCGCCTTCATATCATCAGAGCTAGGGTTTCGGATAACACCGTTTCGCGCCCTTTCATTCTATCTGCTGATACTGTTACGCACTTTACAAAATTGAAAGCCACTAGGTTTAGAAAGCGTTCAGAGAGTCGCGTTTTCGCTGTTTCCAAATCCGAAACCTCTGGTTTGAACGGTAGACTGCAACAAATTGTGAGAACCCCAAACGGGGACTTGAATGGCATAGCCATGGAATCTTCGGGCAACGGGGTGAACTGTTCCCGGAACTTCGAGGAGTTTGCGAGCAACATTCATCTCCGGAAGTTGGTTAGAAACGGGGAATTGGAGGAAGGGCTTAAGTTTCTGGAGCGCATGATATACCAGGGGGATATCCCTGATGTCATTGCCTGCACCAGCTTAATTCGTGGGTTTTGCAAGGGTGGGAAGACTAAGAAAGCAACGAGAGTCATGGAAATTTTGGAGAATTCGGGTGCTGTTCCTGATGTCATAACTTACAATGTTTTGATTAGTGGTTATTGCAAATCAGGAGATATAGATAGAGCCTTGCAGGTTTTGGAGAGAATGAGTGTTGCTCCGGATGTTGTTACATATAACACCATTTTGCGTAGTTTGTGTAGCAGTGGGAAATTGAAGGAGGCAATGGAGGTTCTCGACAGGCAGCTGCAGAGGGAGTGTTATCCTGATGTGATTACTTACACGATCTTGATTGAAGCAACTTGTAATGAAAGTGGCGTTGGTCAGGCGATGAAACTGTTGGATGAGATGAGGAACAAAGGATGCAAACCTGATGTAGTCACATACAATGTTCTTATCAATGGTATTTGCAAGGAGGGTAGATTGGATGAGGCTATTAAGTTTTTGAATAGCATGCCTTCATATGGTTGTCAACCGAATGTGATAACTCATAACATTATTCTGCGTAGCATGTGTAGCACTGGGAGATGGATGGATGCTGAGAGGCTTTTAGCTGACATGCTGAGGAAGGGTTGTTCCCCTAGTGTTGTTACTTTCAATATCTTGATTAACTTCTTGTGCCGGAAACGGTTACTGGGGAGAGCCATTGATGTCTTGGAGAAAATGCCAAAGCATGGTTGTGTACCAAATTCCTTGAGTTACAATCCATTGCTTCATGGGTTTTGTCAAGAGAAAAAGATGGATAGAGCAATTGAGTATTTGGAAATAATGGTGTCAAGGGGTTGTTACCCGGATATAGTGACCTACAACACTTTGCTTACAGCACTATGCAAGGACGGGAAGGTGGATGCTGCAATTGAAATACTGAATCAACTAAGTAGCAAGGGATGCTCACCTGTTTTAGTTACTTATAATACGGTTATTGATGGTCTTGCAAAGGTGGGAAAAACAGAGTCTGCTGTGGAACTCTTAGAAGAGATGCGCAGAAAGGGTCTTAAACCTGATATAATTACGTACTCTTCACTGCTTCGGGGACTTGGCCGTGAAGGAAAGGTGGATAAGGCTATCAAAATTTTCCGTGACATGGAAGGATTAAGTATTAAGCCCAATGCCATCACTTACAACTCAATCATGTTCGGACTTTGTAAGGCTCAGCAAACTAGCCGTGCTATTGATTTTCTGGCTTATATGGTAGAGCAAGGATGCAGACCTACCGAAGTTACATATACCATTCTTATAGAAGGCATTGCTGATGAAGGATTAGCTGAGGAAGCTTTGGAGTTGTTGAATGTATTGTGCTCGAGAGGATTTGTGAAGAAAAGTTCGGCTGAACAGGTAGCAGTCAAGATGTAG 1803 0.4321 MDLVVSPEQFCSFHRLHIIRARVSDNTVSRPFILSADTVTHFTKLKATRFRKRSESRVFAVSKSETSGLNGRLQQIVRTPNGDLNGIAMESSGNGVNCSRNFEEFASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCKGGKTKKATRVMEILENSGAVPDVITYNVLISGYCKSGDIDRALQVLERMSVAPDVVTYNTILRSLCSSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNESGVGQAMKLLDEMRNKGCKPDVVTYNVLINGICKEGRLDEAIKFLNSMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAIEILNQLSSKGCSPVLVTYNTVIDGLAKVGKTESAVELLEEMRRKGLKPDIITYSSLLRGLGREGKVDKAIKIFRDMEGLSIKPNAITYNSIMFGLCKAQQTSRAIDFLAYMVEQGCRPTEVTYTILIEGIADEGLAEEALELLNVLCSRGFVKKSSAEQVAVKM* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1499 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Pvu9g1499 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Pvu9g1499 600 Pfam PPR repeat family 274 323 IPR002885 -
Pvu9g1499 600 Pfam PPR repeat family 451 497 IPR002885 -
Pvu9g1499 600 Pfam PPR repeat family 204 253 IPR002885 -
Pvu9g1499 600 Pfam PPR repeat family 379 428 IPR002885 -
Pvu9g1499 600 Pfam PPR repeat family 519 567 IPR002885 -
Pvu9g1499 600 Gene3D Tetratricopeptide repeat domain 92 232 IPR011990 GO:0005515
Pvu9g1499 600 Pfam PPR repeat 114 134 IPR002885 -
Pvu9g1499 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 239 IPR002885 -
Pvu9g1499 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 172 IPR002885 -
Pvu9g1499 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 555 589 IPR002885 -
Pvu9g1499 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Pvu9g1499 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 485 519 IPR002885 -
Pvu9g1499 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 240 274 IPR002885 -
Pvu9g1499 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 520 554 IPR002885 -
Pvu9g1499 600 Pfam PPR repeat 340 372 IPR002885 -
Pvu9g1499 600 Pfam PPR repeat 169 201 IPR002885 -
Pvu9g1499 600 PANTHER OS02G0565400 PROTEIN 26 599 - -
Pvu9g1499 600 PANTHER ATPASE EXPRESSION PROTEIN 3 26 599 - -
Pvu9g1499 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 450 484 IPR002885 -
Pvu9g1499 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Pvu9g1499 600 Gene3D Tetratricopeptide repeat domain 233 302 IPR011990 GO:0005515
Pvu9g1499 600 Gene3D Tetratricopeptide repeat domain 443 512 IPR011990 GO:0005515
Pvu9g1499 600 Gene3D Tetratricopeptide repeat domain 513 583 IPR011990 GO:0005515
Pvu9g1499 600 Gene3D Tetratricopeptide repeat domain 303 372 IPR011990 GO:0005515
Pvu9g1499 600 Gene3D Tetratricopeptide repeat domain 373 442 IPR011990 GO:0005515
Pvu9g1499 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 203 IPR002885 -
Pvu9g1499 600 SUPERFAMILY HCP-like 387 553 - -
Pvu9g1499 600 TIGRFAM PPR: pentatricopeptide repeat domain 175 201 IPR002885 -
Pvu9g1499 600 TIGRFAM PPR: pentatricopeptide repeat domain 141 174 IPR002885 -
Pvu9g1499 600 TIGRFAM PPR: pentatricopeptide repeat domain 242 276 IPR002885 -
Pvu9g1499 600 TIGRFAM PPR: pentatricopeptide repeat domain 487 521 IPR002885 -
Pvu9g1499 600 TIGRFAM PPR: pentatricopeptide repeat domain 277 311 IPR002885 -
Pvu9g1499 600 TIGRFAM PPR: pentatricopeptide repeat domain 452 486 IPR002885 -
Pvu9g1499 600 TIGRFAM PPR: pentatricopeptide repeat domain 347 381 IPR002885 -
Pvu9g1499 600 TIGRFAM PPR: pentatricopeptide repeat domain 557 588 IPR002885 -
Pvu9g1499 600 TIGRFAM PPR: pentatricopeptide repeat domain 522 556 IPR002885 -
Pvu9g1499 600 TIGRFAM PPR: pentatricopeptide repeat domain 312 346 IPR002885 -
Pvu9g1499 600 TIGRFAM PPR: pentatricopeptide repeat domain 383 416 IPR002885 -
Pvu9g1499 600 TIGRFAM PPR: pentatricopeptide repeat domain 417 449 IPR002885 -
Pvu9g1499 600 TIGRFAM PPR: pentatricopeptide repeat domain 207 241 IPR002885 -
Pvu9g1499 600 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1499 Pvu-Chr9 21250853 21253148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1499 108 599 Glycosyltransferase AT1G05670 30.645 1.33e-75 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1499 - - gmx:100790449 1060.83