Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1490 ATGCGTGTCACCGGGGATCTAGGGTTTTCGAGCCTGATCCTTCTGGTGCTTTGTCTAGTGCTGCCGGTGATCGGCCTCATAATTATCCGTAGATGGCAGGTTTCGGAGACTAGGAAGAGGGAGATTAGGAGACTTTTGGTTTTGGCCGCAGAGGAAACTGCCAGGGCCGAGAAAGAAGCATCATTTGCGTATGGCACGGCGGTTTCTGCCACTCCAAGCAATCAATGTGCCTTGTGCTATTTTCCCGCCACTGCGCGCTGCGCTCAGTGCAAATCCGTTCGCTACTGTTCCTTTGAGTGCCAAACTGTTCATTGGCGGCAAGGTCACAAGTTAGAATGCGGTCCTCCCAGCACAATCCACCGAAGTTATGATGTAACAAGTGATCTTGGCAGCAAGGTGGTAGAACAAGGCTACTCTGGAATCTCTGGTGAGAAGTCAGAATGTGAAAACACAGACTATAAATCATCCTTTGAAAAGCCTCCAATTTCTGATATCTGCTTTTCTCCAAAAGTTTTATCTGGGAATGATGAGAATATCAGATTTCAGTCCCTTGCAGAAGGACATATAACAGATTCCAATTCGGACTTGTCCAGTAACTCTTTTTCTGGATTCTCAGCTTCCACGGGTTCCAGTGATTCATCTGATGATTCCTCTGTCTGTGAGAGTGTCATTTCAAATGAGCATGACAGATCAGATGGACATATTTTTGTTGATTCCACCCTTGACATTCCTGACAACACTAATGACAATAGCGAGGGTGTAACCATGTCTTCTTCACCGAAGTTTGCTAGTTTGGTTGATTCAATAGATGGTTTTTCTACAATGCATAAATCAAATCATATTGGACCTGGTTTTAGTAAAGACGAGAGTAAGTTTGCATCAAATGACAATTCGGGTTCAAGTGTGTATAAGGGGAACACAAATGACCCTTCTACAGTGATTCCTGGATTCTGGGATAAAGCACTTGATGGGATTAAAGATGATTCTAAGAATGACACTCATCCATCCTATTCTGATAAATCAGCGGGTAAAAGGATTGTTTCTGAATCTTCATTTCACTTTTCATTCAGTGCCATTCCTCCTTCACATGTACGAGATACCAAGATGAAGGGTTCTGTATCTGATAATGCTTTTCCAAATTGTATTGGGTCTGAGAATGACAACATGAATTCTTCAAAGGGGAGGAATTTCTCTTTCCCCAACAGCAAAGTTTCTAATGTGAGGAGTTATGTTACTCCAAGTGGTTCTGAATCTGATCATTTGGAATCTAAAGACAGCTCCAGGCCACCTTCATCATCTTTCTCCCTTCAATCCTCCAGTGTTGGCAAAGATTCAGTTTGTGCAGATGCTTTGAGCATCCATAACTTGCAATCGACTGTCACTGAGGTATCAAATCATGTTGTGGAAAACCATTGCAGCACCTTGAAGTCTACTGAGATTAGATGCCTGAAGCTTGACCATGCTGATTCTAATTTAGCTTCTGAAACTAAAGAGCATTCTCATACTAGTACAAAACATGGGAATAATGAGGTTGAATTTGGAACTTGTGCTGTCACTTCCTCTCGTGTTGCTAGCTGTTCTGCAAATTCTAAAAGTGACATAAAAACTTCTGTTTTGAAAGTTGTTGATCAGTTTAGAGGATCAAATATGTCAAAGAACTTTCCATTATCTGTTGGTAGTGATATTGGTGAAAGACACAATGACAAGGTTTTTTTCCCGTATGAATTGTTTGTCAAGCTTTATAACTCGAACAAGGTGGAGTTATGCCCATTTGGATTTATAAATTGCGGAAACAGTTGTTATGCTAATGCTGTACTTCAGTGCTTAGCATTTACACCGCCACTGACTGCTTATTTGCTTCAAGGATTACATTCTAAATCATGTGCAAATAAAAAATGGTGTTTCACCTGCGAATTTGAAAGATTGATTTTGAAGTCAAAGGATACAAAATCTTCAGTATCTCCTGTGAGCATAATCTCTCATTTACAGAATATTGGGAGTCAGCTTACTAATGGAAGAGAAGAAGATGCACATGAATTTCTTAGGCATGTTATTGACACAATGCAATCTGTTTGCCTTATGGAAGCTGGGGTTAATGCATTGGGCTCCTTGGTAGAGGACACTACTTTAATGGGTCTAACATTTGGAGGTTACCTTCGATCAAAGATAAAATGCATGAAATGTGGAGGGAAGTCTGAGCGTCAAGAAAGGATGATGGATCTGACTGTTGAGATAGAAGGGGATATAACAACCCTGGTGGATGCCCTTCAACGGTTTACAAGCACTGAGACTCTGGATGGGGAAAACAAGTACCACTGTGTCAGATGCAAATCTTACGAGAAGGCCAAGAAGAAGCTGACAGTTTCAGAGGCACCCAATGTTCTTACTGTTGCATTAAAGAGATTTCAGCATGGGAAATTTGGGAAGCTCAACAAGCCTATTCAATTTCCTGAAATACTTAACTTGGCACCTTTCATGAGTGGGACTAGTGATAAATCACCCGTATACAGATTGTATGGGGTAGTTGTTCACTTAGATACCATGAATGCTGCCTTTTCGGGTCATTATGTGTCCTATGTGAAGAATATCCAGAACAGGTGGTTCAAGGTTGATGACAGTGTGGTGACGGCTGTTGAATTGGAGAGAGTCTTGACAAAAGGAGCATATATGCTTTTATATGCTAGGTGCTCGCCAAGGGCTCCAAGATTAATTAGGAACAGAATACTATCCTCGGATTCAAAAAGTAAAGTTAGCGGAAAGACTCTTGCAACGAAAGCAAGATATATATCTACGAATTCTGGTGTTGCTGAAAATGTCGATAGTTCCATCTCTCCAGATGGTTCACCTGCCTTGGAGTCTTTCTATTCAAAGTTTCACCACCTGAAAAAGATTTTAGAGGAAGACTCGTCGAGTGATAGTTCATCCCTCATTAGCAGCAATTCTGATGAAGGTTCTTGCAGTACAGATAGTACCTGTGATTCAGCCAGTACAGATGACTTCACTGATTATCTATTTGGTGATTCGGGAAATGGGTGGAGCAGTGCGTGGAAGAATTCAGATTCTGACACATCCTGGTCATCCTCATCTTCCCCCTTAAACTCTCGACATTCCCCCCTCTCTGATATGGACCGATACGATTCTGTTTCTCCTGATGCAGCTGGTTTGTGCATTTCCACAGGTTCAAGTGTGGAGAAAGACCGTCCTGTATACAATTCTTGTTTGCATTCTAACACAACTTCACAGCATAGAGGGTTAGATAGTGGTAGGATTAGTAGCAAGATTAGTAGTAGAGAGAGTGACTCTTTTGTGAAAGTAGGATCTAACCTTTGGAACGATACAGAGTGTGGTGTATTATGTAGAAAGTATAGAAGGAATTAA 3378 0.4136 MRVTGDLGFSSLILLVLCLVLPVIGLIIIRRWQVSETRKREIRRLLVLAAEETARAEKEASFAYGTAVSATPSNQCALCYFPATARCAQCKSVRYCSFECQTVHWRQGHKLECGPPSTIHRSYDVTSDLGSKVVEQGYSGISGEKSECENTDYKSSFEKPPISDICFSPKVLSGNDENIRFQSLAEGHITDSNSDLSSNSFSGFSASTGSSDSSDDSSVCESVISNEHDRSDGHIFVDSTLDIPDNTNDNSEGVTMSSSPKFASLVDSIDGFSTMHKSNHIGPGFSKDESKFASNDNSGSSVYKGNTNDPSTVIPGFWDKALDGIKDDSKNDTHPSYSDKSAGKRIVSESSFHFSFSAIPPSHVRDTKMKGSVSDNAFPNCIGSENDNMNSSKGRNFSFPNSKVSNVRSYVTPSGSESDHLESKDSSRPPSSSFSLQSSSVGKDSVCADALSIHNLQSTVTEVSNHVVENHCSTLKSTEIRCLKLDHADSNLASETKEHSHTSTKHGNNEVEFGTCAVTSSRVASCSANSKSDIKTSVLKVVDQFRGSNMSKNFPLSVGSDIGERHNDKVFFPYELFVKLYNSNKVELCPFGFINCGNSCYANAVLQCLAFTPPLTAYLLQGLHSKSCANKKWCFTCEFERLILKSKDTKSSVSPVSIISHLQNIGSQLTNGREEDAHEFLRHVIDTMQSVCLMEAGVNALGSLVEDTTLMGLTFGGYLRSKIKCMKCGGKSERQERMMDLTVEIEGDITTLVDALQRFTSTETLDGENKYHCVRCKSYEKAKKKLTVSEAPNVLTVALKRFQHGKFGKLNKPIQFPEILNLAPFMSGTSDKSPVYRLYGVVVHLDTMNAAFSGHYVSYVKNIQNRWFKVDDSVVTAVELERVLTKGAYMLLYARCSPRAPRLIRNRILSSDSKSKVSGKTLATKARYISTNSGVAENVDSSISPDGSPALESFYSKFHHLKKILEEDSSSDSSSLISSNSDEGSCSTDSTCDSASTDDFTDYLFGDSGNGWSSAWKNSDSDTSWSSSSSPLNSRHSPLSDMDRYDSVSPDAAGLCISTGSSVEKDRPVYNSCLHSNTTSQHRGLDSGRISSKISSRESDSFVKVGSNLWNDTECGVLCRKYRRN* 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1490 1125 ProSitePatterns Zinc finger MYND-type signature. 76 113 IPR002893 -
Pvu9g1490 1125 Pfam Ubiquitin carboxyl-terminal hydrolase 591 893 IPR001394 GO:0004843|GO:0016579
Pvu9g1490 1125 MobiDBLite consensus disorder prediction 1021 1037 - -
Pvu9g1490 1125 SUPERFAMILY HIT/MYND zinc finger-like 72 115 - -
Pvu9g1490 1125 MobiDBLite consensus disorder prediction 235 259 - -
Pvu9g1490 1125 SUPERFAMILY Cysteine proteinases 587 898 IPR038765 -
Pvu9g1490 1125 MobiDBLite consensus disorder prediction 241 259 - -
Pvu9g1490 1125 MobiDBLite consensus disorder prediction 1021 1044 - -
Pvu9g1490 1125 Gene3D Cysteine proteinases 583 905 - -
Pvu9g1490 1125 MobiDBLite consensus disorder prediction 283 307 - -
Pvu9g1490 1125 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 591 896 IPR028889 -
Pvu9g1490 1125 MobiDBLite consensus disorder prediction 408 439 - -
Pvu9g1490 1125 Pfam MYND finger 76 113 IPR002893 -
Pvu9g1490 1125 ProSiteProfiles Zinc finger MYND-type profile. 76 113 IPR002893 -
Pvu9g1490 1125 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 592 607 IPR018200 GO:0004843|GO:0006511
Pvu9g1490 1125 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 23 1107 - -
Pvu9g1490 1125 MobiDBLite consensus disorder prediction 290 307 - -
Pvu9g1490 1125 MobiDBLite consensus disorder prediction 971 991 - -
Pvu9g1490 1125 Gene3D - 65 116 - -
Pvu9g1490 1125 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 23 1107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1490 Pvu-Chr9 21037931 21046540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1490 569 943 Miscellaneous Gene Families AT4G31670 48.138 2.36e-116 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1490 K11855 - gmx:100795674 1588.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1490 9 21037931 21046540 Pvu9g1490 9 21037931 21046540 ECH