Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1483 ATGCATATGCGAGGAAAGTGTGAGGTAGAATCTTCTAACTTCATCAAATTATCAGCAATTTACCGTAGCAGGCACACCTCTTCGCTCCCATGGATATCTCCTCTCAAATTCACCAAACCCGCACAACCCAAACCGGATCCTCCGCCGGAAACCGCCGTCGAACCTCCGAGGAAGCGGAAGTTCATATCTCACGACGGCGCCATCAATTTGATAAAACGCGAGAAGGACCCGCAGCTCGCCTTGAAGATATTTAACATGGTTTCACAACAGAAGGGGTTTCAGCACAACAATGCCACCTACGCCACCATTCTCGAAAAGCTCGCTCGCTGCAACAAGTTCCACGCCGTGGATCGAGTCCTCCACCAAATGACCTACGAAACCTGTAAATTCCACGAGGGTATTTTCGTTAACCTCATGAGCCATTTCTCCAAATCCTCCCTTCACGACAAAGTGCTGCAAGCGTTTTTCTCCATTCAACCAATCGTCAGGGACAAACCCTCCCCCAAAGCCCTCACCACTTGCCTCAACCTTTTGCTCGACTCGAACCGCGTCGATTTGGCTCGAAAATTGCTTTTGCATGCCAAACGCGGTCTAACGCACAAGCCAAACGTTTGCATATTCAACATCCTTGTGAAGTATCACTGCAAGAATGGGGATCTGGAATCTGCTTTTGAAGTTGTGAAGGAAATGAGAAGCTCTGAGTTTTCTTACCCTAATTTAATTACCTACTCGACCCTTATGGATGGGCTTTGTCGAAATGGAAGACTCAGAGAAGCCTTTCAATTGTTTGAGGAAATGGTTTCGAGGGATCACATTGTTCCTGATCCTCTTACTTACAATGTTTTGATCAATGGATTTTGCCGTGAAGGGAAACCTGACCACGCTAGAAATGTGATTGAGTTTATGAAGAGTAATGGATGTTATCCGAATGTGTATAATTACTCAGCATTGGTGAATGGTTTGTGTAGAATTGGGAAATTGGAAGACGCAAAAGGGGTTTTGGCTGAGATGAAGAACTCTGGTTTGAAACCGGATGCAGTTACATACACTAGTTTGATCAATTACTTGTGTAGGAATGGACAAGTTGGCGAAGCTATTCAGTTGCTTGAAGAAATGAAGGAGAATAAGATTCAAGCTGACACTGTTGTGTTCAATTTGATACTTGGGGGGTTGTGCAGAGAAGATAGATTTGAGGAGGCTCTAGATATGCTTGAGAAACTCCCACAGCAGGGTGTGTATTTGAACAAAGGTAGTTACAGGATTGTTCTGAATTCCTTGATCCAAAATGGTGAGTTGAAAAGTGCAAAGGAGTTACTGGGGTTAATGCTGAGTAGGGGTTTTCTGCCCCATTATGCCTCTTCAAATGAATTGTTGGTTTGTCTTTGTAAGGGGGGGATGGCCGATGATGCTGCCAGGGCACTATTTGATTTGGTGGAGATGGGGTTTCAGCCAGGACTTGAGTCTTGGGAAATTTTAATTGGGTTAATCTGCAGAGACAGGAAGTTGTTGTATATTAAGCCTCCTTCGTCTCCGGAGGGTCGATTTACTCAAATACTGTCTGTGGGAATTGGAGGTTCTGCTCTTGGACCACAGTTTGTTGCAGAGGCACTAGCTCCTGATAATCCTCCACTCAAGATAAGATTTGTTGACAACACGGATCCTGCTGGAATTGATCATCAGATTGCACAGCTTGGGCCGGAGCTAGCCTCAACACTTGTGATTGTGATTTCAAAGAGTGGAGGTACCCCAGAGACTAGAAATGGTTTGTTGGAAGTGCAGAAGGCCTTTCGTGAAGCAGGCTTGGATTTTTCGAAACAGGGTGTTGCTATAACACAAGAAAATTCTTTGTTGGATAACACTGCCAGAATTGAGGGCTGGTTAGCTAGATTTCCCATGTTTGATTGGGTGGGAGGCAGAACGTCAGAGATGTCTGCAGTTGGCCTGCTTCCAGCAGCCCTTCAGGATATGGTTATTCTTCCATACAAGGATAGCCTGTTATTATTCAGTAGATACTTGCAGCAGCTGGTCATGGAATCTCTAGGCAAGGAGTTTGACTTGGATGGTAATCGGGGAACACGGTCAGCTCTGTATGCCAATGACAGAGAGTCCATCACAGTTTCTGTACAAGAAGTGACACCAAGAACAGTTGGTGCTCTTGTTGCACTCTACGAACGAGCAGTAGGAATTTATGCCTCGCTTGTCAACATAAATGCTTATCATCAACCT 2226 0.451 MHMRGKCEVESSNFIKLSAIYRSRHTSSLPWISPLKFTKPAQPKPDPPPETAVEPPRKRKFISHDGAINLIKREKDPQLALKIFNMVSQQKGFQHNNATYATILEKLARCNKFHAVDRVLHQMTYETCKFHEGIFVNLMSHFSKSSLHDKVLQAFFSIQPIVRDKPSPKALTTCLNLLLDSNRVDLARKLLLHAKRGLTHKPNVCIFNILVKYHCKNGDLESAFEVVKEMRSSEFSYPNLITYSTLMDGLCRNGRLREAFQLFEEMVSRDHIVPDPLTYNVLINGFCREGKPDHARNVIEFMKSNGCYPNVYNYSALVNGLCRIGKLEDAKGVLAEMKNSGLKPDAVTYTSLINYLCRNGQVGEAIQLLEEMKENKIQADTVVFNLILGGLCREDRFEEALDMLEKLPQQGVYLNKGSYRIVLNSLIQNGELKSAKELLGLMLSRGFLPHYASSNELLVCLCKGGMADDAARALFDLVEMGFQPGLESWEILIGLICRDRKLLYIKPPSSPEGRFTQILSVGIGGSALGPQFVAEALAPDNPPLKIRFVDNTDPAGIDHQIAQLGPELASTLVIVISKSGGTPETRNGLLEVQKAFREAGLDFSKQGVAITQENSLLDNTARIEGWLARFPMFDWVGGRTSEMSAVGLLPAALQDMVILPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRGTRSALYANDRESITVSVQEVTPRTVGALVALYERAVGIYASLVNINAYHQP 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1483 742 Gene3D Tetratricopeptide repeat domain 162 289 IPR011990 GO:0005515
Pvu9g1483 742 Gene3D Tetratricopeptide repeat domain 53 160 IPR011990 GO:0005515
Pvu9g1483 742 Gene3D Tetratricopeptide repeat domain 395 504 IPR011990 GO:0005515
Pvu9g1483 742 Gene3D Tetratricopeptide repeat domain 290 394 IPR011990 GO:0005515
Pvu9g1483 742 Gene3D - 692 742 - -
Pvu9g1483 742 SUPERFAMILY TPR-like 167 406 IPR011990 GO:0005515
Pvu9g1483 742 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Pvu9g1483 742 Pfam Phosphoglucose isomerase 515 654 IPR001672 GO:0004347|GO:0006094|GO:0006096
Pvu9g1483 742 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Pvu9g1483 742 Gene3D - 655 691 - -
Pvu9g1483 742 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 26 504 - -
Pvu9g1483 742 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 273 IPR002885 -
Pvu9g1483 742 PANTHER FERTILITY RESTORER HOMOLOGUE A-LIKE 26 504 - -
Pvu9g1483 742 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Pvu9g1483 742 SUPERFAMILY SIS domain 513 742 IPR046348 GO:0097367|GO:1901135
Pvu9g1483 742 MobiDBLite consensus disorder prediction 34 57 - -
Pvu9g1483 742 Pfam PPR repeat family 238 288 IPR002885 -
Pvu9g1483 742 Pfam PPR repeat family 380 426 IPR002885 -
Pvu9g1483 742 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Pvu9g1483 742 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Pvu9g1483 742 CDD SIS_PGI_1 514 653 IPR035476 -
Pvu9g1483 742 CDD SIS_PGI_2 654 742 IPR035482 -
Pvu9g1483 742 Pfam PPR repeat 200 231 IPR002885 -
Pvu9g1483 742 Pfam PPR repeat 305 338 IPR002885 -
Pvu9g1483 742 Pfam PPR repeat 341 373 IPR002885 -
Pvu9g1483 742 ProSiteProfiles Glucose-6-phosphate isomerase family profile. 369 654 IPR001672 GO:0004347|GO:0006094|GO:0006096
Pvu9g1483 742 PRINTS Glucose-6-phosphate isomerase signature 518 537 IPR001672 GO:0004347|GO:0006094|GO:0006096
Pvu9g1483 742 PRINTS Glucose-6-phosphate isomerase signature 630 648 IPR001672 GO:0004347|GO:0006094|GO:0006096
Pvu9g1483 742 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Pvu9g1483 742 Gene3D - 505 654 - -
Pvu9g1483 742 ProSiteProfiles Glucose-6-phosphate isomerase family profile. 677 742 IPR001672 GO:0004347|GO:0006094|GO:0006096
Pvu9g1483 742 TIGRFAM PPR: pentatricopeptide repeat domain 382 415 IPR002885 -
Pvu9g1483 742 TIGRFAM PPR: pentatricopeptide repeat domain 206 238 IPR002885 -
Pvu9g1483 742 TIGRFAM PPR: pentatricopeptide repeat domain 278 311 IPR002885 -
Pvu9g1483 742 TIGRFAM PPR: pentatricopeptide repeat domain 347 380 IPR002885 -
Pvu9g1483 742 TIGRFAM PPR: pentatricopeptide repeat domain 418 449 IPR002885 -
Pvu9g1483 742 TIGRFAM PPR: pentatricopeptide repeat domain 314 346 IPR002885 -
Pvu9g1483 742 TIGRFAM PPR: pentatricopeptide repeat domain 241 275 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1483 Pvu-Chr9 20976750 20986628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1483 279 502 Miscellaneous Gene Families AT4G11690 25.431 1.17e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1483 - - pvu:PHAVU_009G143500g 1456.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1483 9 20976750 20986628 Pvu9g1483 9 20976750 20986628 ECH