Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1474 ATGCTCCACAACAAGTCCTTCGTCAAGAAAACCAGGGCCGGCAAAGTCATGAAGCAAGTGCGGGAGCACTACCTGCGTGACGACATATACTGCGGCGCACCGTTTTGCACCGTTTGCGATACTTCGGGTGCTCGCCTCAACGCTTCCCCTTCAACAACCATTCTTGTCGTGGACACCAATGTCGTGCTCAATCAGATTGATTTGCTGGAGAATCAGGCATTCGATAACATTGTGGTGTTGTCCATTGTGTTGGAAGAGGTTAAGAACAAGAATATGGCTGTTTACAATCGTATAAGAGCTCTCTGTAGCAATTCCACTAAGAAGTTCTATGTTTTTTCCAATGAGTACCACAGGGATACATATGTTAAGGAAATGAGTGGTGAAACTAAAAATGATAGGAATGATAGAGCTATCCGAGTGGCTACTCAGTGGTATCAGAATCATCTTGGTGGTGCAGTAAAGGTTTTGCTTATAACTAATGATAGAGAGAACAAAAGGAAGGCTAGTGAAGAAGGCATTTTTGCTGAAACAGTTGAGTCATATGTCAAGTCTTTAGACCAACCTGATCTACTTGATCTTCTTGTGCGGCCTGCATCAGAAGATGTGAACATGGAAGAGGTTGAAGATCTTAGACCATCCAAGAGGAAAGTCATATATTCAGAGCATAAGCCAATGTCAGAAATTACTTCTGGTTTGCATCGTGGAATATATCATCAAGGGAAGCTTCGCGTAAACCGTTACAATCCATTTGAAGCATATGTTGGGAGGGAGAGCATTGGTGATGAAATAGTTATTTATGGGCGCTCAAATATGAATCGAGCTTTTGATGGGGATGTTGTGGCAGTTGAACTTCTGCCACAGGACCAGTGGCAAGAAGTCTCATCTCTATCTATAGCTGGTGAAGAAGATGAGAATGAGGATGAAGATGTCCATCTAGCTCCAAATAGCGCTGATGTTGCACCTAGGACTATTCCTCAGCAGGGTTCTTCTGGACAAGTAAATGCTGTACCTAATCGTCCTTCGGGTCGTATTGTTGGTATTATAAAGAGGAACTGGCATTCGTATTGTGGATCTTTGGAGCCAATGCCTATGCCTGCAGGAAGTGGTGGAATTGCCCATGCCTTGTTTGTCTCCAAAGATCGCAGAATTCCCAAGCTTCGAATCCAAACACGCCAACTTGAGAACCTTTTGGATAAGAGGATTATTGTTGCAGTTGATTCTTGGGATCGTCAGTCTAGATATCCATCAGGCCATTATGTGCGAACTATAGGGGAGATAGGTGATAGAGATACTGAAAGTGAGGTGGTTTTGATAGAAAATGATATAAATACACGACCATTCTCTTCACAAGTGCTGGCATGCTTGCCACCATTGCCATGGTTGGTCTCTTCTGAAGATTTGTCCAATCCAATCAGGCAGGACTTGCGTCATCTGCTTGTGTTCAGTGTGGATCCTCCAGGCTGCAAGGATATTGATGATGCACTCCATTGTCACGCTCTTCCAAATGGAAACTTTGAAGTTGGAGTTCATATTGCTGATGTTACAAATTTTGTTCATCCTGGCACTCCACTTGATGATGAGGCTTCACAGAGGGGTACATCTGTCTACCTTGTGGAGCGGCGAATAGACATGCTTCCCAAACCTCTTACGGAGGATATATGTTCTCTTCGTTCTGATGTGGAAAGGCTAGCATTCTCTGTCATTTGGGAAATGACACCTGAAGCGGACATTATTTCCACCAGATATACAAAAAGTGTCATAAAGTCCTCTGCAGCATTGTCTTATGTTGAAGCACAAGCGAGGATGGATGATAGTCGACTGAGGGATCCCATTACTACAGATTTGAGGAATATGAATAGTTTGGCTAAGAAAATGAGATTGAGGCGCATTGAGAGAGGAGCTTTGACTCTAGCATCGGCTGAAGTCAAATTTCAAATTGACACAGAGACTCATGACCCTCTTGATATTGGAATGTACCAGATCCGGGAGGCCAACCAAATGGTGGAGGAGTTTATGCTTGCTGCTAATGTTTCCGTTGCAGAACAAATTCTTAAAAGTTTTTCGTTGTGCTCATTATTAAGGCGTCATCCAACTCCAACCAGAGAGATGCTTGAACCCTTATTACAGACTGCTGCTGCAGTTGGCTTGCACTTGGATGTTTCATCATCAAAAGCATTGGCTGATTCTCTTGACCATGCTGTGGGTGATGATCCGTACTTCAATAAGTTAATCCGTATACTGGCAACTAGGTGCATGAGTCAGGCAGTTTATTTCTGCAGTGGGGATCTTAGCCCTCCAGAATATCATCATTATGGGCTTGCAGCTCCTTTGTATACCCATTTCACATCACCTATAAGAAGATACGCAGATGTCATTGTGCACAGGCTACTTGCTGCTTCTTTAGGAATATCAAAGTTACCGTCTGTATTTCAAGACAGACTCCAGCTCAGTAGTATTGCAGACAATTTAAATTATCGGCATAGGAATGGCCAGTATGCAGGGCGAGCATCTGTAGAGCTACATACTCTAATTTATTTCAGGAAGAGGCCTACAGACACGGAGGCTAGAATAGTGAAAATAAGATCTAATGGCTTTTTTGTGTTTGTTCCCAAATATGGCATAGAAGGACCTATATATTTGACAAAATCCGGAAAGGGAAATGGAGAATGGTACGTAGATGAGCAACAGCAGAAAATAAAAAGGATGGATGGTAGCCTTTCATACAGTGTTTTGCAGACAGTCCAAATTCACATGGAGGTTGTGGAGCCTCAGCCTAACCGTCCCAAACTTCAGCTTACTCTCATCTAG 2808 0.432 MLHNKSFVKKTRAGKVMKQVREHYLRDDIYCGAPFCTVCDTSGARLNASPSTTILVVDTNVVLNQIDLLENQAFDNIVVLSIVLEEVKNKNMAVYNRIRALCSNSTKKFYVFSNEYHRDTYVKEMSGETKNDRNDRAIRVATQWYQNHLGGAVKVLLITNDRENKRKASEEGIFAETVESYVKSLDQPDLLDLLVRPASEDVNMEEVEDLRPSKRKVIYSEHKPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGRESIGDEIVIYGRSNMNRAFDGDVVAVELLPQDQWQEVSSLSIAGEEDENEDEDVHLAPNSADVAPRTIPQQGSSGQVNAVPNRPSGRIVGIIKRNWHSYCGSLEPMPMPAGSGGIAHALFVSKDRRIPKLRIQTRQLENLLDKRIIVAVDSWDRQSRYPSGHYVRTIGEIGDRDTESEVVLIENDINTRPFSSQVLACLPPLPWLVSSEDLSNPIRQDLRHLLVFSVDPPGCKDIDDALHCHALPNGNFEVGVHIADVTNFVHPGTPLDDEASQRGTSVYLVERRIDMLPKPLTEDICSLRSDVERLAFSVIWEMTPEADIISTRYTKSVIKSSAALSYVEAQARMDDSRLRDPITTDLRNMNSLAKKMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAEQILKSFSLCSLLRRHPTPTREMLEPLLQTAAAVGLHLDVSSSKALADSLDHAVGDDPYFNKLIRILATRCMSQAVYFCSGDLSPPEYHHYGLAAPLYTHFTSPIRRYADVIVHRLLAASLGISKLPSVFQDRLQLSSIADNLNYRHRNGQYAGRASVELHTLIYFRKRPTDTEARIVKIRSNGFFVFVPKYGIEGPIYLTKSGKGNGEWYVDEQQQKIKRMDGSLSYSVLQTVQIHMEVVEPQPNRPKLQLTLI* 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1474 935 Gene3D - 208 313 - -
Pvu9g1474 935 Pfam RNB domain 472 801 IPR001900 GO:0003723|GO:0004540
Pvu9g1474 935 SUPERFAMILY Nucleic acid-binding proteins 852 931 IPR012340 -
Pvu9g1474 935 Pfam S1 domain 853 921 IPR033770 -
Pvu9g1474 935 SMART RNB_2 472 803 IPR001900 GO:0003723|GO:0004540
Pvu9g1474 935 Gene3D - 352 427 - -
Pvu9g1474 935 Gene3D - 9 193 - -
Pvu9g1474 935 SUPERFAMILY PIN domain-like 54 187 IPR029060 -
Pvu9g1474 935 Gene3D - 852 935 IPR012340 -
Pvu9g1474 935 Pfam Dis3-like cold-shock domain 2 (CSD2) 374 441 IPR041505 -
Pvu9g1474 935 CDD PIN_Rrp44-like 9 181 - -
Pvu9g1474 935 ProSitePatterns Ribonuclease II family signature. 770 794 IPR022966 -
Pvu9g1474 935 PANTHER EXOSOME COMPLEX EXONUCLEASE RRP44 3 935 - -
Pvu9g1474 935 SUPERFAMILY Nucleic acid-binding proteins 430 848 IPR012340 -
Pvu9g1474 935 SUPERFAMILY Nucleic acid-binding proteins 216 424 IPR012340 -
Pvu9g1474 935 PANTHER RIBONUCLEASE 3 935 - -
Pvu9g1474 935 SMART PIN_9 53 166 IPR002716 -
Pvu9g1474 935 Pfam PIN domain 55 178 IPR002716 -
Pvu9g1474 935 Pfam Rrp44-like cold shock domain 220 310 IPR033771 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1474 Pvu-Chr9 20853723 20871250 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1474 K12585 - gmx:100806652 1759.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1474 9 20853723 20871250 Pvu9g1474 9 20853723 20871250 ECH