Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1460 ATGTTGGCCTTCTCCAGGTTCAGGAAAGCAGCGGAGGTCTCCTGCGTATTCTGTCGAAACCAAAAGCCTCCCACATACCTCCGAAGATTTTCCCTTCCGTCCGAGGAACCTCCCATTTCGGACCCCCATTTGCCTCTTCGTCTCTGCATCTCGGTGGCCCTCAAGTTAGGGACTTTCTCCACCCTCAAATACCGCGGCTTGGTGAGTGAGGTCATTTGCACCAACAACTGGTTTTCCCTTTACTGGGAAGGCCTCGAGCATATTAAGAAATCCGGAGTTTTTATATCTTCTGATTCGGTTTATGTTTTGATACGGGCGTATTGGCAAGTGGGTCTCGCCGAGAAGGCTATAGAGTCGTTTGGTAGAATGGGTGAGGTTGGTAGCGTGCCTGATGCTCATGCCTATAACATCATTTTGGATATTGCGTTTAAGAAAGAGTTGTTTGTGTTGGCTCTTGCGGTGTATAATCTGATGCTTAAGTCCAATTGTTGTCCTAGTGAACGCATTTATAACATGTTGATTGGGGGGTTTTGTAGAAGTGAGGATGTTAATGGTGCGCTTGCGATGCTCCATGAGATGGGCCAAAGGGATGTAGAGCCTAGTGAGATGACATATTTTGCTATTGTTTTTGGTCTGTGTCGTGCGAGGAGGGTACATGAGGCACACAGGACGTTTAATGTGATGAAAGAACGTGGGTACAGGCTTAATTCGATGTCTTATTGTGTTTTGATTAATGAGTATTGCAAGATGGGGAGGTCAGATGAAGCCGTTTCGATTCTGCAATCGTTAGAGAAAGACGGGTTACCTCTTGATATAAAGGGCTACAGTCATCTGATTGCGGGATTTTTTAGGGAAAGGAGATACAATGAAGCGCATTCGTGGTATGGAAGGATGCTTAAGAAGGGTGTTGTTCCAGATGTTGTTTTGTACACAGTTATGATACGGGGTTTGTCGAGCGAGGGCAGGATTGGTGAAGCTGTGAAGATGTTTTGTGAGATGACCCAGCAAGGCTTAGTTCCTGATGCTGTTTGTTACAATGAAGTTATTAAAGGTTTCTGTGACGCTGGTCTTCTGGATCGAGCACGATCTCTCCAACTTCAAATTTCTGAGCATGAAGGGTTTCACAATGTCTGCACGCATACCATTCTCATCTGTGACCTGTGTAAGAGAGGAATGGTTGACGAGGCACAAGAAATATTTAATCGGATGGAGAAGTCTGGATGTTTTCCTTCACTTGTAACCTTCAATACTCTTATATATGGACTGTGCAAGGCTGGTAAACTGGAGGAGGCACATCTCATGTGGTACAAGATGGAGATGGGGAGAAGTCCTTCGTTATTCTTCCGGCTTTCTCGGGGTTCTAATCAGGTTTTAGATCGTGTTAGTCTCCGGAAAAAGGTGGAGCAAATGTGTGAAACTGGACAACTTTTGGATGCTTACAAGTTTCTGATACAACTTGCTGATAGTGGGGTTATGTCTGACATTGTGACGTATAATGTTCTACTCTACGGCTTTTGCAGAGCTTCTAAGCTTAATGGTGCGTTAAAGCTTTTCAAGGATATGCAAGACAAGGGGCCATCACCTGACTCTGTTACTTATGGGACACTGATTGATGGGCTTTTCAGAGTTGGCAGAGAAGAAGACGCCCTGAAGATGTATGAGCATATGTTGAAGCATGGATGTCAACCTAGCTTTGAAGTTTATAAAGCACTTATGACTTGGTTGTCTAGAAATAAGAAGGTCTCACAGGCCATCAGTTATTATTTGAGTTTTTTAAAGAACCTTCGTGGCAGGGAAGGTGATTCAATCAATGTTTTGGAGGGATATTTTGTCAGAGGAGAAGTGGAACAGGCAATTCGAGGTTTACTAGAACTGGACTTCAGCTGTGTATATTTGATCGAAGGTCTCTGTAGAAAAGGAAGGCTGGATGATGCAGTAAACATCTTTCTTTACGCTCTTGAGAAAGGTTTTGTGATGCGGTCAAGGATTTGTGAGCGGCTCCTCAAGTGTCTATTGTGTTCCCCAGATAAAAGGGGTTATGCTATTGATCTTGTTCGTTGGATGGAGTCTGCTGGATACCTTTTAAATAAATTTGGTTGGTATAAAACGCAGCTTGTACAAAGCAGGACAAGCAATACAATTGATTTTCTAAGAGATTAA 2160 0.4366 MLAFSRFRKAAEVSCVFCRNQKPPTYLRRFSLPSEEPPISDPHLPLRLCISVALKLGTFSTLKYRGLVSEVICTNNWFSLYWEGLEHIKKSGVFISSDSVYVLIRAYWQVGLAEKAIESFGRMGEVGSVPDAHAYNIILDIAFKKELFVLALAVYNLMLKSNCCPSERIYNMLIGGFCRSEDVNGALAMLHEMGQRDVEPSEMTYFAIVFGLCRARRVHEAHRTFNVMKERGYRLNSMSYCVLINEYCKMGRSDEAVSILQSLEKDGLPLDIKGYSHLIAGFFRERRYNEAHSWYGRMLKKGVVPDVVLYTVMIRGLSSEGRIGEAVKMFCEMTQQGLVPDAVCYNEVIKGFCDAGLLDRARSLQLQISEHEGFHNVCTHTILICDLCKRGMVDEAQEIFNRMEKSGCFPSLVTFNTLIYGLCKAGKLEEAHLMWYKMEMGRSPSLFFRLSRGSNQVLDRVSLRKKVEQMCETGQLLDAYKFLIQLADSGVMSDIVTYNVLLYGFCRASKLNGALKLFKDMQDKGPSPDSVTYGTLIDGLFRVGREEDALKMYEHMLKHGCQPSFEVYKALMTWLSRNKKVSQAISYYLSFLKNLRGREGDSINVLEGYFVRGEVEQAIRGLLELDFSCVYLIEGLCRKGRLDDAVNIFLYALEKGFVMRSRICERLLKCLLCSPDKRGYAIDLVRWMESAGYLLNKFGWYKTQLVQSRTSNTIDFLRD* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1460 719 Gene3D Tetratricopeptide repeat domain 593 705 IPR011990 GO:0005515
Pvu9g1460 719 Gene3D Tetratricopeptide repeat domain 444 592 IPR011990 GO:0005515
Pvu9g1460 719 Pfam PPR repeat family 167 214 IPR002885 -
Pvu9g1460 719 Pfam PPR repeat family 376 424 IPR002885 -
Pvu9g1460 719 Pfam PPR repeat family 494 541 IPR002885 -
Pvu9g1460 719 Pfam PPR repeat family 305 354 IPR002885 -
Pvu9g1460 719 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Pvu9g1460 719 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Pvu9g1460 719 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
Pvu9g1460 719 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 71 384 - -
Pvu9g1460 719 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 259 438 - -
Pvu9g1460 719 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 325 693 - -
Pvu9g1460 719 Gene3D Tetratricopeptide repeat domain 210 369 IPR011990 GO:0005515
Pvu9g1460 719 Gene3D Tetratricopeptide repeat domain 67 208 IPR011990 GO:0005515
Pvu9g1460 719 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Pvu9g1460 719 SUPERFAMILY HCP-like 472 656 - -
Pvu9g1460 719 Pfam PPR repeat 239 268 IPR002885 -
Pvu9g1460 719 Pfam PPR repeat 102 127 IPR002885 -
Pvu9g1460 719 Pfam PPR repeat 631 657 IPR002885 -
Pvu9g1460 719 Pfam PPR repeat 275 303 IPR002885 -
Pvu9g1460 719 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 625 659 IPR002885 -
Pvu9g1460 719 TIGRFAM PPR: pentatricopeptide repeat domain 275 307 IPR002885 -
Pvu9g1460 719 TIGRFAM PPR: pentatricopeptide repeat domain 413 439 IPR002885 -
Pvu9g1460 719 TIGRFAM PPR: pentatricopeptide repeat domain 308 342 IPR002885 -
Pvu9g1460 719 TIGRFAM PPR: pentatricopeptide repeat domain 169 202 IPR002885 -
Pvu9g1460 719 TIGRFAM PPR: pentatricopeptide repeat domain 628 658 IPR002885 -
Pvu9g1460 719 TIGRFAM PPR: pentatricopeptide repeat domain 378 411 IPR002885 -
Pvu9g1460 719 TIGRFAM PPR: pentatricopeptide repeat domain 239 271 IPR002885 -
Pvu9g1460 719 TIGRFAM PPR: pentatricopeptide repeat domain 134 167 IPR002885 -
Pvu9g1460 719 TIGRFAM PPR: pentatricopeptide repeat domain 207 236 IPR002885 -
Pvu9g1460 719 TIGRFAM PPR: pentatricopeptide repeat domain 531 564 IPR002885 -
Pvu9g1460 719 TIGRFAM PPR: pentatricopeptide repeat domain 496 529 IPR002885 -
Pvu9g1460 719 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 131 165 IPR002885 -
Pvu9g1460 719 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Pvu9g1460 719 Gene3D Tetratricopeptide repeat domain 370 443 IPR011990 GO:0005515
Pvu9g1460 719 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 200 IPR002885 -
Pvu9g1460 719 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Pvu9g1460 719 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 529 563 IPR002885 -
Pvu9g1460 719 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1460 102 584 Glycosyltransferase AT1G05670 28.247 2.02e-54 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1460 - - lang:109340115 825.083