Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1392 ATGAGCCACCGGGGAATAGACCGGGACGACGACGATGACGATTACATGGATGACGAGCAGGTCGCCGACTTCGAAGAGGAGGAGGACCGCCGAGGGCGCGGCGGCAGGAAACGCAGAAGATCTGGTTTCATTGACGATGACGCAGAGGAGGTAGATGAGGATGAAGAGGAGGAGGACGACGATGACGAGGATTTCGATGCCCGGGGCGGTCGCAGGCGCCAGTACAAGAAGGTTTCCGCTTCCAATTTTTTTGACGAGGAGGCTGTGGTGGATAGCGATGAGGAAGAGGAAGAGGAAGAAGGCGAAGACGACTTCATTGTTGAGGGTGGAGCCGATCTGCCCGAAGAAGATGATGGGAGAAGGATGCGTAATAGGCGGATGCTGCCACATCACCAAGAAGATCATGAAGATCTTGAAGCTGTGGCCAGAAGCATCCAGGAACGTTATGGAAGGCGCCTAACGGATTATGATGAAGAAACAACAGATGTAGAACAACAGGCTCTTTTGCCGTCTGTGAGAGATCCTAAGCTTTGGATGGTCAAATGCGCAATTGGTCATGAGAGAGAAACAGCTGTTTGCCTCATGCAAAAGTACATAAATAGGCCATCTGAATTTCAAATCAGATCAGCTATTGCTCTTGATCATCTCAAAAACTATATATACGTGGAAGCAGATAAAGAAGCCCATGTCAGAGAGGCTTGCAAAGGTCTACGCAATATATTTGGCCAAAAAATAACTCTTGTCCCAATCAGAGAAATGACTGATGTTCTGTCAGTTGAAAGCAAAGCTATTGATCTTGCTAGGGATACCTGGGTTAGAATGAAGATAGGGACATATAAAGGGGACCTTGCTAAAGTAGTAGATGTCGATAATGTGCGGCAGAGGGTTACTGTCAAATTAATTCCAAGGATAGACCTACAGGCTCTCGCAAATAAGTTGGAAGGTAGGGAGGTTGTGAAAAAGAAGGCTTTTGTTCCTCCTCCTCGATTTATGAATGTTGATGAAGCAAGGGAACTGCATATCCGTGTGGAGCATAGACGCGATGCCTATGGGGAACGATTTGATGCAATTGGGGGCATGATGTTCAAAGATGGTTTCTTATACAAAACTGTATCAATAAAATCCATCAGTGCTCAGAACATCAAACCTAGTTTTGATGAGTTGGAAAAATTTCGTAAACCGGGTGAGAGTGGAGATGGTGATGTTGCTAGTTTGTCAACTTTGTTTGCAAACAGGAAGAAAGGGCACTTTATGAAAGGTGATGCAATTATTGTTGTCAAGGGTGATTTAAAGAACTTGAAGGGGAAGGTGGAGAAAGTTGATGAAGATAATGTTCATATAAGACCAGAAATGGAGGGACTTCCAAAAACTATTGCTGTAAATGAAAAGGAACTTTGTAAATATTTTGAGCCTGGAAACCACGTTAAGGTTGTTTCTGGTGCTCAAGAAGGGGCTACGGGCATGGTTGTGAAGGTGGAGCAGCATGTCTTGATCTTAATATCTGATACAACAAAAGAGCATATCCGTGTATTTGCAGATGATGTTGTAGAAAGTTCAGAAGTAACGACTGGAGTTACTAGAATTGGGGACTATGAACTTCGTGATCTTGTATTGCTAGATAATATGAGCTTTGGTGTGATAATCCGTGTAGAAAGTGAAGCATTTCATGTTCTGAAGGGGATTCCTGACAGACACGAAGTAGTTCTTGTTAAATTAAGAGAGATCAAATGCAAGATAGATAAGAAAATAAGCGTGCAGGATAGATTTAAGAATACAGTTTCATCAAAGGATGTTGTCCGGATTGTTGATGGTTCCAGCAAAGGGAAACAAGGTCCCGTGGAACACATATATAGAGGAGTCTTGTTCATCTTTGATCGCCATCATCTTGAACATGCGGGCTTTATATGTGCTAAGGCCCAATCATGTGTGGTAGTGGGAGGTTCACGCTCCAGTGGTGACAGAAATGGTGATGCCTACTCAAGATTTCCCACTCTTAGAAGCCCTAGTCGTATTCCACCATCTCCAAGGAGGTTTCCTCGAGGAGGGCCAATGGATTCTGGAGGGAGACATAGGGGTGGGAGGGGGCATGATGGTTTGGCAGGTACAACTGTTAAAGTACGTCAGGGTCCCTATAAAGGTTACCGTGGGCGTGTTATAGATGATAAAGGTGCATCAGTTCGTGTTGAGCTGGAATCTCAAATGAAGGTTGTAACAGTTGACCGCAACCATATATCTGACAATGTGGCTATAACTCCATATCGTGATACATCTCGCTACGGAATGGGAAGTGAAACCCCAATGCATCCTTCTCGGACTCCCTTACATCCATATATGACTCCAATGAGAGATCCTGGAGCAACACCAATTCATGATGGAATGAGGACACCTATGCGTGACCGAGCATGGAATCCTTACACTCCAATGAGTCCTCCAAGGGACAACTGGGAAGATGGAAATCCAGGCTCTTGGGGAGCAAGTCCACAGTATCAGCCTGGAAGTCCTCCATCAAGACCATATGAAGCCCCGACTCCTGGTGCTGGATGGGCTAGTACACCTGGTGGAAATTATAGTGAAGCTGGAACGCCTCGGGACAGTTCTGCCTATGCCAATGCTCCAAGCCCGTATTTACCATCAACACCTGGTGGGCAGCCTATGACACCAAGTTCAGCATCTTATCTTCCGGGCACTCCTGGAGGACAGCCTATGACTCCAGGCACTGGTGGTATGGACATGATGTCTCCAGTTTTAGGTGGGGACAATGAAGGCCCATGGTTTATACCAGATATATTAGTCAATGTACACAGGGCCGGAGACGAATCTGTTGGAGTTATAAGAGAGGTTCTTCCGGATGGTTCGTACAAGGTAGCTCTTGGATCTAGTGGTAATGGTGAAACGATTACAGCCCTTCCTAATGAAATGGAGGCTGTGGTACCAAGAAAATCAGACAAAATAAAGATTATGGGTGGGGTATTACGTGGTGCCACTGGGAAGTTGATTGGTGTAGATGGTACTGATGGAATTGTAAAGGTAGATGACACGTTGGATGTCAAGATTTTAGACTTGGTTCTTTTGGCAAAATTAGCTCAATCATGA 3093 0.4526 MSHRGIDRDDDDDDYMDDEQVADFEEEEDRRGRGGRKRRRSGFIDDDAEEVDEDEEEEDDDDEDFDARGGRRRQYKKVSASNFFDEEAVVDSDEEEEEEEGEDDFIVEGGADLPEEDDGRRMRNRRMLPHHQEDHEDLEAVARSIQERYGRRLTDYDEETTDVEQQALLPSVRDPKLWMVKCAIGHERETAVCLMQKYINRPSEFQIRSAIALDHLKNYIYVEADKEAHVREACKGLRNIFGQKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELHIRVEHRRDAYGERFDAIGGMMFKDGFLYKTVSIKSISAQNIKPSFDELEKFRKPGESGDGDVASLSTLFANRKKGHFMKGDAIIVVKGDLKNLKGKVEKVDEDNVHIRPEMEGLPKTIAVNEKELCKYFEPGNHVKVVSGAQEGATGMVVKVEQHVLILISDTTKEHIRVFADDVVESSEVTTGVTRIGDYELRDLVLLDNMSFGVIIRVESEAFHVLKGIPDRHEVVLVKLREIKCKIDKKISVQDRFKNTVSSKDVVRIVDGSSKGKQGPVEHIYRGVLFIFDRHHLEHAGFICAKAQSCVVVGGSRSSGDRNGDAYSRFPTLRSPSRIPPSPRRFPRGGPMDSGGRHRGGRGHDGLAGTTVKVRQGPYKGYRGRVIDDKGASVRVELESQMKVVTVDRNHISDNVAITPYRDTSRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPGSWGASPQYQPGSPPSRPYEAPTPGAGWASTPGGNYSEAGTPRDSSAYANAPSPYLPSTPGGQPMTPSSASYLPGTPGGQPMTPGTGGMDMMSPVLGGDNEGPWFIPDILVNVHRAGDESVGVIREVLPDGSYKVALGSSGNGETITALPNEMEAVVPRKSDKIKIMGGVLRGATGKLIGVDGTDGIVKVDDTLDVKILDLVLLAKLAQS* 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1392 1030 CDD KOW_Spt5_6 971 1028 IPR041980 -
Pvu9g1392 1030 PANTHER SUPPRESSOR OF TY 5 22 1028 IPR039659 GO:0006357|GO:0032784
Pvu9g1392 1030 MobiDBLite consensus disorder prediction 1 121 - -
Pvu9g1392 1030 Gene3D - 471 520 IPR014722 -
Pvu9g1392 1030 CDD KOW_Spt5_3 468 518 IPR041976 -
Pvu9g1392 1030 MobiDBLite consensus disorder prediction 87 112 - -
Pvu9g1392 1030 CDD KOW_Spt5_2 417 467 IPR041975 -
Pvu9g1392 1030 PIRSF Spt5 2 1030 IPR017071 GO:0006357|GO:0032784
Pvu9g1392 1030 Pfam Spt5 transcription elongation factor, acidic N-terminal 83 170 IPR022581 -
Pvu9g1392 1030 MobiDBLite consensus disorder prediction 26 46 - -
Pvu9g1392 1030 ProSitePatterns Ribosomal protein L24 signature. 420 437 IPR005825 GO:0003735|GO:0005840|GO:0006412
Pvu9g1392 1030 CDD KOW_Spt5_1 269 306 IPR041973 -
Pvu9g1392 1030 CDD KOW_Spt5_4 596 638 IPR041977 -
Pvu9g1392 1030 MobiDBLite consensus disorder prediction 854 873 - -
Pvu9g1392 1030 Gene3D - 156 258 IPR036735 GO:0006355
Pvu9g1392 1030 Gene3D - 411 468 IPR014722 -
Pvu9g1392 1030 SUPERFAMILY Translation proteins SH3-like domain 409 447 IPR008991 -
Pvu9g1392 1030 Gene3D - 681 747 IPR014722 -
Pvu9g1392 1030 Pfam KOW motif 471 496 IPR005824 -
Pvu9g1392 1030 SMART kow_9 697 724 IPR005824 -
Pvu9g1392 1030 SMART kow_9 265 292 IPR005824 -
Pvu9g1392 1030 SMART kow_9 977 1004 IPR005824 -
Pvu9g1392 1030 SMART kow_9 592 619 IPR005824 -
Pvu9g1392 1030 SMART kow_9 468 495 IPR005824 -
Pvu9g1392 1030 SMART kow_9 416 443 IPR005824 -
Pvu9g1392 1030 SUPERFAMILY Translation proteins SH3-like domain 460 519 IPR008991 -
Pvu9g1392 1030 MobiDBLite consensus disorder prediction 648 701 - -
Pvu9g1392 1030 MobiDBLite consensus disorder prediction 755 911 - -
Pvu9g1392 1030 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 22 1028 - -
Pvu9g1392 1030 CDD NGN_Euk 176 258 IPR039385 -
Pvu9g1392 1030 Gene3D - 265 307 IPR014722 -
Pvu9g1392 1030 MobiDBLite consensus disorder prediction 11 25 - -
Pvu9g1392 1030 CDD KOW_Spt5_5 699 745 IPR041978 -
Pvu9g1392 1030 MobiDBLite consensus disorder prediction 882 896 - -
Pvu9g1392 1030 MobiDBLite consensus disorder prediction 47 64 - -
Pvu9g1392 1030 Pfam Early transcription elongation factor of RNA pol II, NGN section 176 257 IPR005100 -
Pvu9g1392 1030 SMART nusgn_4 174 260 IPR006645 GO:0140673
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1392 Pvu-Chr9 19826003 19835913 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1392 K15172 - gmx:100801380 1798.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1392 9 19826003 19835913 Pvu9g1392 9 19826003 19835913 ECH