Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1390 ATGAGTTTTAACCTTGCCACATGGAGAAACAACCCATCTTATTGGTCGTGTTCAATAAGGAACTACATTCGGCAAGGATCATTGAGATGTGCCCTTCTTGCGTATAAACAAACCCGGCACGAAGGATTATACGACTCCAGTGTGGTCGCTCTGTTACTCAAGGCATGCGCTTTTCTTCCATTTCTTCACTACGTGAAGACCTTGCATGCAGAGTCCATCAAGGCCGGTTCAGGGAGCGACGTGATCATTGGAACCGCATTGCTTACAACTTATGCCAAATGTGATGCTACCAGGGATGCACGGAAACTGTTCGATACAATGCCTGACAGAAATGTTGTGACTTGGAATGCCATGATCAGTGGGTACTTGAGAAATGGAGACACGGAATCTGCTTCTCTTGTGTTTGAGGAGATGCAGGGGAAAACTCATGTGACTTGGAGTCAGATGATATCTGGGTTTGCTAGGAATGGGGATATTGTGACTGCTAGGAGGTTGTTTGATGAGATTCCCCATGAGTTGAAGGATGTGTTAATATGGACTGTGATGGTTGATGGGTATGCTAGAATAGGAGAGATGGAAGCTGCCAGGGAGGTCTTTGAGTTGATGCCCGAAAGGAATTGCTTTGTGTGGTCATCTATGCTTTATGGGTACTTCAAGAAGGGCAATATCGCTGAGGCTGAGGCTGTTTTCAACCGGGTTCTGGTTCGCAGTTTGGAGATTTGGAATTCCATGATTGCTGGCTATGTCCAGAATGGATTTGGTGAGAAAGCACTACAAGCTTTTGAGGGAATGGGAGCTGAAGGGTTTGAGCCGGATGAGTTCACTGTTGTTGGTGTTTTATCTGCCTGTGGGCAGCTGGGGCGCCTGGATGTTGGTAAGCAAATCCATCACATGATAGAACATAAAGGGATAGCTGTGAACCAGTTTGTGTTGAGTGTATTGGTTGACATGTATGCGAAATGTGGTGACTTGGTCAATGCAAGGTTGGTGTTTGAAGGATTCACTGAGAGGAATATCTTCTGCTGGAATGCTATGATTTCAGGTTTTGCTATCCATGGAAAATGCAGAGAGGTTCTTGAGTTTTTTGACAGGATGGAGCACTCAAATATAAGGCCTGATGGTATCACCTTTCTTACTGTGCTTTCAGCTTGTGCTCATGGGGGTTTGGTCCGTGAGGCTTTGGAAGTAATATCTAAAATGGAGGGATATAGAATTGAAATAGGAATCAAGCATTATGGATGCATGGTTGACCTCTTGGGAAGAGCAGGGAGATTAAAAGATGCTTATGACTTGATAATAAGAATGCCAGTGAAAGCTAACGACACAGTTTTGGGGGCAATGCTTGGTGCATGCCGTATTCATTCAGATATAAACATGGCAGAACAAGTAATGAAGTTGATCCATGAAGACTCTGTTGCAGGTGCAAATTCTCACAGTGTGCTTTTGTCCAATATTTATGCAACTTCAGAAAAATGGGAGAAAGCTGAAAGGATGAGGAGAATCCTGGTAGATGGAGGATCTCAAAAGACAACTGGGTGTAGTTCAATGATCTTTAGTGACTCTTGTGGATTGAAGTGA 1578 0.4411 MSFNLATWRNNPSYWSCSIRNYIRQGSLRCALLAYKQTRHEGLYDSSVVALLLKACAFLPFLHYVKTLHAESIKAGSGSDVIIGTALLTTYAKCDATRDARKLFDTMPDRNVVTWNAMISGYLRNGDTESASLVFEEMQGKTHVTWSQMISGFARNGDIVTARRLFDEIPHELKDVLIWTVMVDGYARIGEMEAAREVFELMPERNCFVWSSMLYGYFKKGNIAEAEAVFNRVLVRSLEIWNSMIAGYVQNGFGEKALQAFEGMGAEGFEPDEFTVVGVLSACGQLGRLDVGKQIHHMIEHKGIAVNQFVLSVLVDMYAKCGDLVNARLVFEGFTERNIFCWNAMISGFAIHGKCREVLEFFDRMEHSNIRPDGITFLTVLSACAHGGLVREALEVISKMEGYRIEIGIKHYGCMVDLLGRAGRLKDAYDLIIRMPVKANDTVLGAMLGACRIHSDINMAEQVMKLIHEDSVAGANSHSVLLSNIYATSEKWEKAERMRRILVDGGSQKTTGCSSMIFSDSCGLK* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1390 525 PANTHER BNACNNG13520D PROTEIN 11 516 - -
Pvu9g1390 525 Pfam PPR repeat 178 207 IPR002885 -
Pvu9g1390 525 Pfam PPR repeat 209 234 IPR002885 -
Pvu9g1390 525 Pfam PPR repeat 412 436 IPR002885 -
Pvu9g1390 525 Pfam PPR repeat 144 169 IPR002885 -
Pvu9g1390 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Pvu9g1390 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Pvu9g1390 525 PANTHER OS01G0913400 PROTEIN-RELATED 11 516 - -
Pvu9g1390 525 Gene3D Tetratricopeptide repeat domain 142 205 IPR011990 GO:0005515
Pvu9g1390 525 Pfam PPR repeat family 240 283 IPR002885 -
Pvu9g1390 525 Pfam PPR repeat family 338 385 IPR002885 -
Pvu9g1390 525 Pfam PPR repeat family 110 140 IPR002885 -
Pvu9g1390 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Pvu9g1390 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 271 IPR002885 -
Pvu9g1390 525 TIGRFAM PPR: pentatricopeptide repeat domain 209 237 IPR002885 -
Pvu9g1390 525 TIGRFAM PPR: pentatricopeptide repeat domain 113 139 IPR002885 -
Pvu9g1390 525 TIGRFAM PPR: pentatricopeptide repeat domain 178 207 IPR002885 -
Pvu9g1390 525 TIGRFAM PPR: pentatricopeptide repeat domain 240 273 IPR002885 -
Pvu9g1390 525 TIGRFAM PPR: pentatricopeptide repeat domain 144 169 IPR002885 -
Pvu9g1390 525 TIGRFAM PPR: pentatricopeptide repeat domain 375 406 IPR002885 -
Pvu9g1390 525 TIGRFAM PPR: pentatricopeptide repeat domain 340 373 IPR002885 -
Pvu9g1390 525 Gene3D Tetratricopeptide repeat domain 309 523 IPR011990 GO:0005515
Pvu9g1390 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Pvu9g1390 525 SUPERFAMILY TPR-like 72 232 IPR011990 GO:0005515
Pvu9g1390 525 Pfam E motif 454 515 IPR046848 -
Pvu9g1390 525 Gene3D Tetratricopeptide repeat domain 13 141 IPR011990 GO:0005515
Pvu9g1390 525 Gene3D Tetratricopeptide repeat domain 206 306 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1390 Pvu-Chr9 19812487 19814064 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1390 11 514 Glycoside Hydrolase AT3G49170 30.859 2.55e-70 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1390 - - gmx:100802813 930.628