Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1373 ATGGAAGTCTCAAAAGATCCTAACTCAAACCCGGGTCACTTCGAAGATTCAGATTCCGAACTCGAACTCTACACCATCCCAAGCTCTTCAAGATGGTTCGCGTGGGACGAAATTCACGAAACCGAGAGAACAGCGTTCAAGGAATTTTTCGATGCGAGCTCGATTTCGAGAACCCCCAAAATATACAAAGAATACAGAGACTTCATCATCAACAAGTACAGGGAAGAACCTTCCAGGAGGCTCACATTCACCGAGGTGAGAAAATCGCTGGTTGGTGACGTCACGTTTCTGCACAAGGCGTTCCTCTTCCTAGAGAATTGGGGTTTGATCAACTACGGCGCGCCCTCTGCTGCAGACGTGGAGAAGGAAGAGGAGGAGGAGGAACCGTGCAAGGTTCGCCTCGAAGAAGGAACCCCCAATGGGATTCGCGTGGTGGCCACGCCGAACTCGTTGAAGCCGATATTGGTGCCTCGCGGTGCGAAGACTGGTGGAAATGCGACCGCGGCTTCTCTCAAATTGCCACCGCTCGCCTCCTATTCGGATATTTATGGGGATTTGATTAGGCAGAAAGAGGGGAACTGTGGGCTTTGCGGTGGCAAATGTGGTTCAGGACATTACCTATGTACTCAGGATAATATCATTATTTGTGCAAATTGTTTCAAAAGTGGGAATTATGGGGAGAAAAGGTCTTCAGAGGATTTCGTATTGAGTGAGTCAAGTGAAAATAGTGGCAAACATGACACTGTCTGGACTGAGGGAGAAATTCTTCTCCTTTTGGAATCTGTTTTGAAGCATGGAGATGACTGGGAGCTTGTTGCTCAAAATGTTCAAACCAAGACTAAACTTGATTGTATCTCAAAACTCATTGAGCTGCCTTTTGGGGAGCTCATGTTGGGCCCTGCTCACAGAAATGTCAACATTAATAGTGCTAATGGCGTTGTGGTGAACAATGCCAAACAAGTTCAGTCATCTTCGTCTGACAACCAAGAAATTTCAAAGACAAAGGATCAACCTCCTGAGCCTACAAATGAAAATGAGCAGAATGGGGATGCTGTGAAGGAAAGTCCTTCAAAAAGACAGCGTGTTACTCCCCTGTCAGATTCCAGTTGTTCACTAATGAATCAGGTGGGACTGATCTCTAATGTGGTTGACCCTCATATCACAGCTGCCGCAGCTGATGCTGCTGTTTCAGCTCTTTGTGATGAGAATTTGTGTCCAAGGGATATATTTGATGTTGAAGAAGATTCAGCAAGAGATCTTGAGGGTGAAGGTTTAGAGATGGAGAGGTCCTCTCTATCAGAAATACCTTTGCCACTGCGTGTAAGAGCTGCCACTGCAACTGCTCTTGGAGCTGCAGCTGCTCGAGCAAAGTTGTTGGCTGACCAGGAAGTCAGAGAGATTGAACATTTAGTAGCAACTATAATTGAAGCTCAGATCAATAAATTGCTGTACAAGGTTAAACATTTTGACGATCTGGAGCTGTTGATGGAAAAGGAACATGCTGAAATGGAAAATATAAAAGATTCTATCTTGACTGAACGGATTGATGTGTTAAGGAGAACATTTAGATCTGGAATCACTAGATGGAAGGATTATTCTTATGTAAAATCTTAG 1614 0.4492 MEVSKDPNSNPGHFEDSDSELELYTIPSSSRWFAWDEIHETERTAFKEFFDASSISRTPKIYKEYRDFIINKYREEPSRRLTFTEVRKSLVGDVTFLHKAFLFLENWGLINYGAPSAADVEKEEEEEEPCKVRLEEGTPNGIRVVATPNSLKPILVPRGAKTGGNATAASLKLPPLASYSDIYGDLIRQKEGNCGLCGGKCGSGHYLCTQDNIIICANCFKSGNYGEKRSSEDFVLSESSENSGKHDTVWTEGEILLLLESVLKHGDDWELVAQNVQTKTKLDCISKLIELPFGELMLGPAHRNVNINSANGVVVNNAKQVQSSSSDNQEISKTKDQPPEPTNENEQNGDAVKESPSKRQRVTPLSDSSCSLMNQVGLISNVVDPHITAAAADAAVSALCDENLCPRDIFDVEEDSARDLEGEGLEMERSSLSEIPLPLRVRAATATALGAAAARAKLLADQEVREIEHLVATIIEAQINKLLYKVKHFDDLELLMEKEHAEMENIKDSILTERIDVLRRTFRSGITRWKDYSYVKS* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1373 537 Pfam SWIRM-associated region 1 447 521 IPR032451 -
Pvu9g1373 537 ProSiteProfiles SWIRM domain profile. 24 121 IPR007526 GO:0005515
Pvu9g1373 537 SUPERFAMILY Homeodomain-like 245 300 IPR009057 -
Pvu9g1373 537 Pfam Myb-like DNA-binding domain 250 288 IPR001005 -
Pvu9g1373 537 ProSiteProfiles SANT domain profile. 245 296 IPR017884 -
Pvu9g1373 537 PANTHER BRAHMA ASSOCIATED PROTEIN 155 KDA 20 528 - -
Pvu9g1373 537 SMART sant 246 294 IPR001005 -
Pvu9g1373 537 Coils Coil 489 509 - -
Pvu9g1373 537 CDD SANT 250 287 IPR001005 -
Pvu9g1373 537 MobiDBLite consensus disorder prediction 320 366 - -
Pvu9g1373 537 Pfam SWIRM domain 27 112 IPR007526 GO:0005515
Pvu9g1373 537 Gene3D - 30 116 IPR036388 -
Pvu9g1373 537 PANTHER SWI/SNF COMPLEX-RELATED 20 528 - -
Pvu9g1373 537 Gene3D - 246 294 - -
Pvu9g1373 537 SUPERFAMILY Homeodomain-like 21 116 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1373 Pvu-Chr9 19527028 19531974 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1373 K11649 - gmx:100790238 872.463