Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1372 ATGTACCCATTTTTTAAGCACACGAAAGGTCCTCACTTTCCTCTTTCCTATTGCTCTCTTCTCCTAAACCACTGTTTATCTCAAAGATCTCTTAATTTTGTCAAAGTCGTGCATGCCCATTTCTTCAAACTGGGTCTTAACACCTACACCTATCTGGGTAATCGCTGTCTCAATCTCTACTCAGAGCTCGGCCACATCAATGACACACTGAAGGTGTTTGACGATATTTCACACAAGAACTCCACGTCCTGGAACATTTTCTTAAAGGGGTTTCTGAAAAGTGGCCAGCTTTGCAAGGCCTTCCACGTGTTTGATGTAATGCCTGCTAGAGATGTTGTTACTTGGAACTCCATGATTTCGGGTTATGCTTCTTTTGGGTTTTTAAGTCATGCATTGGAGCTTTTTGTTGAAATGCAAGGCACTGATGTGAGGCCCAGTGGGTTCACTTTCTCCATTGTGATGTCACTCGTGTCAAGTCCCTCCCATGCTAAGCAGATACATTGTAGGATGATCAGAAGTGAGATGGATTTGGATAATGTAGTTCTTGGGAATTCGTTAATAACAATGTATGGAAAGCTTGGTCTGGTTGAATATGCTTTTGGTGTGATTATGACTATGAAACAGTTTGATGTTATATCTTGGAACTCTTTGATCTGGGCCTGTCAAAGAGCTGGGCACCATGAGCAGGCTCTGGAGCTGTTCTATCAGATGAGAGGTGTCGAGTTTTTACCCGATCAGTTTACATGTTCAATGTTAATGAGTGTCTCTTCTAACTTGCGAGACTTGGACAAGGATTGGAGGATTCTGTTCAGCTCTTTAAGGAACAAGATCAATGGGATTCAGCTCTATGCAATTCCATGA 861 0.4216 MYPFFKHTKGPHFPLSYCSLLLNHCLSQRSLNFVKVVHAHFFKLGLNTYTYLGNRCLNLYSELGHINDTLKVFDDISHKNSTSWNIFLKGFLKSGQLCKAFHVFDVMPARDVVTWNSMISGYASFGFLSHALELFVEMQGTDVRPSGFTFSIVMSLVSSPSHAKQIHCRMIRSEMDLDNVVLGNSLITMYGKLGLVEYAFGVIMTMKQFDVISWNSLIWACQRAGHHEQALELFYQMRGVEFLPDQFTCSMLMSVSSNLRDLDKDWRILFSSLRNKINGIQLYAIP* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1372 286 Pfam PPR repeat family 110 155 IPR002885 -
Pvu9g1372 286 Pfam PPR repeat family 210 254 IPR002885 -
Pvu9g1372 286 PANTHER OS03G0435200 PROTEIN 1 274 - -
Pvu9g1372 286 TIGRFAM PPR: pentatricopeptide repeat domain 113 146 IPR002885 -
Pvu9g1372 286 TIGRFAM PPR: pentatricopeptide repeat domain 212 245 IPR002885 -
Pvu9g1372 286 TIGRFAM PPR: pentatricopeptide repeat domain 83 112 IPR002885 -
Pvu9g1372 286 Gene3D Tetratricopeptide repeat domain 16 158 IPR011990 GO:0005515
Pvu9g1372 286 Gene3D Tetratricopeptide repeat domain 159 282 IPR011990 GO:0005515
Pvu9g1372 286 PANTHER OS07G0578800 PROTEIN-RELATED 1 274 IPR045215 GO:0003723|GO:0009451
Pvu9g1372 286 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Pvu9g1372 286 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 80 110 IPR002885 -
Pvu9g1372 286 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1372 Pvu-Chr9 19521113 19523387 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1372 95 268 Glycoside Hydrolase AT3G49170 27.778 5.08e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1372 - - pvu:PHAVU_009G132700g 590.497