Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1371 ATGATTACACTTCCATATGTATATCATGCTACCTTATATTACAAAGAAAGTGAATACAATGGTATGGAATTGCATGGTCTGGCACGAACGCTTCAGTCCTGGTCCACCATCAGTGAAGGGAGGCAACTCCACGTGGCATTCCTTAAAACTGGCATTCTGAATTACTCCGTCACCGTCGCAAACCGTCTTCTTCAGCTATACACCCGCTGCGGTTTTCTCCGTGATGCGTCTCACTTGTTCGACGAAATGCCCAGTACAAACTCTTTCTCTTGGAACACCCTCGTCCAAGCACATCTCAACTCAGGCCACACCCACAATGCCTTCCACTTGTTCAATGCCATGCCTCACAAGACTCACTTCTCATGGAACATGGTCGTTTCCTCATTCGCCAAGTCCGGACACCTCCAACTAGCCTACTCACTATTCAATGCCATGCCCTCAAAGAACCACCTTGTCTGGAATTCCATAATTCATAGTTATTCCCGACATGGGCATCCTGGGAAAGCGCTTTTCCTCTTCAAGAGAATGAACTCTGACCCTGCACAGATAATGTACCGTGATGCTTTTGTGCTGGCCACTGTTCTCGGCGCTTGTGCTGACTTGCTGGCTCTCAACTGCGGGAAACAAGTTCATGCACGTGTTTTCGTTGATGGTCTTGGGTTGGATCTTGACAGGGTTTTGTGCAGCTCGCTGATTAACTTGTACGGGAAGTGTGGTGATTTGGATGGTGCTGCTCGCGTTATTAGTTCCGTGAGGGAAGTGGATGATTTCTCTTTTTCAGCTTTGATATCTGGTTATGCAAATGCTGGCAGAATGAGGGAGGCGAGAAGGGTTTTCGATATTAAGGTTGATCCATGTGTTGTGCTGTGGAATTCGATTATTTCGGGTTATGTGTCCAACGGTGAGGAGATGGAAGCAGTGAATCTTTTCTCTGCAATGCTCAGGAATGGTGTGAGGGGAGACGTGTCTACTGTTGCTAATATTTTGAGTGCAGGCAGTTGTTTACTTGTTGTAGAACTTGTTAGGCAAATGCATGCCTACGGTTTTAAAGCCGGGGCGACTCATGATATTGTGGTTGCTAGTGCTCTGCTTGATGCCTACTCCAAATGTCAAAGCCCTTGTGAAGCTTGCAAGTTGTTTAGTGAGCTCAAAGCTTATGATACCATTTTACTTAATACTATGATCAGTGTGTATTCCAATTGTGGAAGGATAGAAGATGCCAAATGGATTTTTAATACGATGCCTAAGAAAACCTTAATTTCATGGAATTCAATCCTAGTTGGCCTGACCCAGAATGCGTGTCCAATTGAAGCGTTAGATGTTTTTTGTCAGATGAATAAGCTGGACTTAAAAATGGACAAGTTTAGTTTTGCTAGTGTTATCAGTGCTTGTGCCAGCAAATCATCCCTTGAACTTGGTGAGCAGGTATTCGGTAAAGCTGTTACCATTGGACTCGACTCCGACCAGATTATTTCTACCTCCCTTGTTGATTTTTACTGTAAATGTGGTTTTGTTAAGATAGGGCGTAAAGTTTTTGATGGAATGGTAAAAACTGATGAAGTCTCTTGGAACACAATGTTGATGGGGTATGCCGCAAATGGACATGGAATTGAAGCATTAACACTCTTTAGCGAAATGAGGTACTGTGGTGTCAAGCCTTCTGCCATTACTTTTACTGGAGTTCTTTCAGCCTGTGATCACTGTGGTCTGGTTGAAGAAGGAAGATATCTGTTCCACACAATGACACATAACTATAATATAAATCCCGGAATTGAACATTACTCTTGCATGGTTGATCTTTTTGCTCGAGCTGGATGCTTCGAGGAAGCAATGGATCTTATGGCAGAGATGCCTTTTCAGGCTGATGCAAACATGTGGTTGTCAGTATTGAGAGGCTGTATTGCTCATGGAAACAAAATTATTGGCAAGACAGCGGCAGAGCAAATCATTCAGCTTGATCCTGAAAATTCAGGTGCTTATATACAATTATCTAACATACTTGCATCTTCTGGGGATTGGGAAGGGTCAGCACTAGTAAGAGAACTGATGAGAGACAAGCATGTTCCGAAAATTCCTGGTTGCAGTTGGGCAGATTGTTAA 2100 0.4367 MITLPYVYHATLYYKESEYNGMELHGLARTLQSWSTISEGRQLHVAFLKTGILNYSVTVANRLLQLYTRCGFLRDASHLFDEMPSTNSFSWNTLVQAHLNSGHTHNAFHLFNAMPHKTHFSWNMVVSSFAKSGHLQLAYSLFNAMPSKNHLVWNSIIHSYSRHGHPGKALFLFKRMNSDPAQIMYRDAFVLATVLGACADLLALNCGKQVHARVFVDGLGLDLDRVLCSSLINLYGKCGDLDGAARVISSVREVDDFSFSALISGYANAGRMREARRVFDIKVDPCVVLWNSIISGYVSNGEEMEAVNLFSAMLRNGVRGDVSTVANILSAGSCLLVVELVRQMHAYGFKAGATHDIVVASALLDAYSKCQSPCEACKLFSELKAYDTILLNTMISVYSNCGRIEDAKWIFNTMPKKTLISWNSILVGLTQNACPIEALDVFCQMNKLDLKMDKFSFASVISACASKSSLELGEQVFGKAVTIGLDSDQIISTSLVDFYCKCGFVKIGRKVFDGMVKTDEVSWNTMLMGYAANGHGIEALTLFSEMRYCGVKPSAITFTGVLSACDHCGLVEEGRYLFHTMTHNYNINPGIEHYSCMVDLFARAGCFEEAMDLMAEMPFQADANMWLSVLRGCIAHGNKIIGKTAAEQIIQLDPENSGAYIQLSNILASSGDWEGSALVRELMRDKHVPKIPGCSWADC* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1371 699 TIGRFAM PPR: pentatricopeptide repeat domain 120 150 IPR002885 -
Pvu9g1371 699 TIGRFAM PPR: pentatricopeptide repeat domain 258 280 IPR002885 -
Pvu9g1371 699 TIGRFAM PPR: pentatricopeptide repeat domain 594 617 IPR002885 -
Pvu9g1371 699 TIGRFAM PPR: pentatricopeptide repeat domain 288 321 IPR002885 -
Pvu9g1371 699 TIGRFAM PPR: pentatricopeptide repeat domain 521 554 IPR002885 -
Pvu9g1371 699 TIGRFAM PPR: pentatricopeptide repeat domain 152 176 IPR002885 -
Pvu9g1371 699 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Pvu9g1371 699 Gene3D Tetratricopeptide repeat domain 205 351 IPR011990 GO:0005515
Pvu9g1371 699 Gene3D Tetratricopeptide repeat domain 355 476 IPR011990 GO:0005515
Pvu9g1371 699 Gene3D Tetratricopeptide repeat domain 20 117 IPR011990 GO:0005515
Pvu9g1371 699 Gene3D Tetratricopeptide repeat domain 118 204 IPR011990 GO:0005515
Pvu9g1371 699 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Pvu9g1371 699 PANTHER OS07G0578800 PROTEIN-RELATED 27 699 IPR045215 GO:0003723|GO:0009451
Pvu9g1371 699 PANTHER OS03G0849700 PROTEIN 27 699 - -
Pvu9g1371 699 Gene3D Tetratricopeptide repeat domain 516 696 IPR011990 GO:0005515
Pvu9g1371 699 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 148 IPR002885 -
Pvu9g1371 699 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Pvu9g1371 699 Pfam E motif 636 696 IPR046848 -
Pvu9g1371 699 Pfam PPR repeat 227 249 IPR002885 -
Pvu9g1371 699 Pfam PPR repeat 257 280 IPR002885 -
Pvu9g1371 699 Pfam PPR repeat 420 448 IPR002885 -
Pvu9g1371 699 Pfam PPR repeat 61 84 IPR002885 -
Pvu9g1371 699 Pfam PPR repeat 120 149 IPR002885 -
Pvu9g1371 699 Pfam PPR repeat 89 115 IPR002885 -
Pvu9g1371 699 Pfam PPR repeat 152 177 IPR002885 -
Pvu9g1371 699 Pfam PPR repeat 493 517 IPR002885 -
Pvu9g1371 699 Pfam PPR repeat 593 617 IPR002885 -
Pvu9g1371 699 Pfam PPR repeat 392 417 IPR002885 -
Pvu9g1371 699 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 519 553 IPR002885 -
Pvu9g1371 699 Pfam PPR repeat family 285 329 IPR002885 -
Pvu9g1371 699 Pfam PPR repeat family 519 565 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1371 Pvu-Chr9 19517491 19520293 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1371 40 698 Glycoside Hydrolase AT3G49170 29.929 1.44e-96 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1371 - - pvu:PHAVU_009G132600g 1415.59