Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1370 ATGGGCGTGAGTGCCGCTTCTGTAGTGAGCCAGCTCCTCCGCAAGGAAAACCTGAATCCACAGCAACAGCCCCAAACCAACGAAGTGATAAAAACAATCCTCACTTACCTCAAAGCGGGTCGCATCCGAAAGGCGACTTCCATTCTCTTCGCCTTCCCAAAACCCTTTCCATACTCTCTCTATGCCCTCTTCTTCCGCCTATGTACCTCCCATCGCGCCATCGTCGAGGCTCGCAAGGTCGAGTCCCACTTGCTCACTTTCTCCCCCAATCCCCCCGTCTTCCTCTTAAACCGCGCCATCGAGTCTTACGCCAAATGCCAATGTCTACGCGACGCCCGCGAACTGTTCGACGAAATGCCCCGACGAGATGGCGGCACTTGGAACGCTCTCATCACTGCTTACTCCCGATCGGGTTTCCCCAACCAGGCTTTTTCCTTGTTCCTGTTGATGACTAGGTCCGGTTTTTGGCCCTCTGAGGTTACTTTTGCTAGCGTTCTTGCTTCTTGTGCTGCTGCTTCTCAGCTTCCTCTTTCCAAGCAGGTTCATGGGCTGGTCACAAAGTTTGGCTTTTGTGGTAACGTCATACTCGGGAGTTCACTTGTTGATGTGTATGCCAAGTGCGGGGTTATGGTTGATGCTCGCAGGATGTTTCATGAGATTCCGCAGCCTAATGCTGTCACTTGGAATGTGATCGTGAGGCGTTATCTTGATGCCGGTGATGCAAAGGAAGCGGTTTTCATGTTCTCGCGGATGTTTTCCACGGCGGTTCAGCCGATGAATTTTACTTTCTCTAACGCTCTTGTTGCTTGTTCCAGCGTGTCTGCGCTCCGGGAGGGGATGCAGATTCATGGGGTGGTTGTGAAGTTAGGCCTCCAAGAGGATAATGTCATTTCGAGTTCGCTTGTAAACATGTATGTGAAGTGTCACAAGCTGGAGGATGGTTCTCGGGTTTTTGATCTGCTTGGTTCGAGAGATTTGGTGTCTTGGACTTCCATTGTTTCGGCGTATGCAATGAGTGGGAAAACTTTGGAGGCAAGAAAGCTTTTCGATAAGATGCCTGAACGGAATGTGGTTTCATGGAATGCAATGTTAGCGGGATATGTTCGGTGCTTTGAATGGTCTGAGGCGTTAGATTTTATGTATCTCATGCTTGATAGGATTAAATATGTGGATCATGTCACACTCGGTTTGATGTTAAATATTTCTGCGGGTATTTCGGATCATGAAACGGGGAAACAGATTCATGGATACACCTACAGACATGGCTTCCACTTGGACATTAGGGTTAGCAATGCCCTTCTTGACATGTATGGTAAGTGTGGGAACTTGAACATGGCCAGGGTTTGGTTTAACCAGATGAGTGATTGGCGTGACAGGGTTTCCTGGAATGCTTTGTTGGCTAGCTATGGCCATCATCAGTTAAGTGAACAGGCGTTAACAATGTTTTCAGAGATGCAGTGGGAGACAAAACCAACCAAATATACATTCGGAACCCTTTTGTTAGCATGTGCAAATACCTTTGCTCTTCACCACGGTAAACAAATTCACGGATTCATCACTAGACATGGATTTCAGATAGATACTATAATGAGAACCGCTCTGGTTTACATGTACTGTAAATGCCGTTGTCTTGGGTATGCTATTGAGGTTCTCAAGGGAGCAGTTTCTAGGGATGTGATAATTTGGAATACCATAATTTTGGGATGTTGTCACAATCATAGGGGTAAAGAAGCGCTTGAACTTTTTGCGATGATGGAAGCAGAAGGCGTCAAGCCAGACCATGTGACCTTAAAGGGCATTCTGCTTGCTTGCGTTGAAGAAGGCCTAATTGAGTTTGGCACAGAATGCTTCAAGTCACTGAGCAGTAAATACCATGTCCTGCCTCGGCTGGAGCATTATAACTGCATGATTGAACTCTACATTCGGCATGGATCCATGCATGAGCTTGACAATTTTATGAGGACAATGACCATTGAGCCCACACTTCCAATGTTGGAGAGAGTTCTTGATGCTTGCCAGAAAAATGAGTGGGCAAGATTGGGAGAATGGATTACAGAAAAAATTAATGCATTCAAATATTAA 2082 0.4664 MGVSAASVVSQLLRKENLNPQQQPQTNEVIKTILTYLKAGRIRKATSILFAFPKPFPYSLYALFFRLCTSHRAIVEARKVESHLLTFSPNPPVFLLNRAIESYAKCQCLRDARELFDEMPRRDGGTWNALITAYSRSGFPNQAFSLFLLMTRSGFWPSEVTFASVLASCAAASQLPLSKQVHGLVTKFGFCGNVILGSSLVDVYAKCGVMVDARRMFHEIPQPNAVTWNVIVRRYLDAGDAKEAVFMFSRMFSTAVQPMNFTFSNALVACSSVSALREGMQIHGVVVKLGLQEDNVISSSLVNMYVKCHKLEDGSRVFDLLGSRDLVSWTSIVSAYAMSGKTLEARKLFDKMPERNVVSWNAMLAGYVRCFEWSEALDFMYLMLDRIKYVDHVTLGLMLNISAGISDHETGKQIHGYTYRHGFHLDIRVSNALLDMYGKCGNLNMARVWFNQMSDWRDRVSWNALLASYGHHQLSEQALTMFSEMQWETKPTKYTFGTLLLACANTFALHHGKQIHGFITRHGFQIDTIMRTALVYMYCKCRCLGYAIEVLKGAVSRDVIIWNTIILGCCHNHRGKEALELFAMMEAEGVKPDHVTLKGILLACVEEGLIEFGTECFKSLSSKYHVLPRLEHYNCMIELYIRHGSMHELDNFMRTMTIEPTLPMLERVLDACQKNEWARLGEWITEKINAFKY* 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1370 693 Gene3D Tetratricopeptide repeat domain 178 282 IPR011990 GO:0005515
Pvu9g1370 693 Gene3D Tetratricopeptide repeat domain 409 510 IPR011990 GO:0005515
Pvu9g1370 693 Gene3D Tetratricopeptide repeat domain 11 177 IPR011990 GO:0005515
Pvu9g1370 693 Gene3D Tetratricopeptide repeat domain 291 408 IPR011990 GO:0005515
Pvu9g1370 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 558 592 IPR002885 -
Pvu9g1370 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Pvu9g1370 693 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 567 690 - -
Pvu9g1370 693 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 4 472 - -
Pvu9g1370 693 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 475 564 - -
Pvu9g1370 693 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 567 690 - -
Pvu9g1370 693 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 475 564 - -
Pvu9g1370 693 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 472 - -
Pvu9g1370 693 TIGRFAM PPR: pentatricopeptide repeat domain 358 386 IPR002885 -
Pvu9g1370 693 TIGRFAM PPR: pentatricopeptide repeat domain 561 593 IPR002885 -
Pvu9g1370 693 TIGRFAM PPR: pentatricopeptide repeat domain 460 486 IPR002885 -
Pvu9g1370 693 TIGRFAM PPR: pentatricopeptide repeat domain 327 358 IPR002885 -
Pvu9g1370 693 TIGRFAM PPR: pentatricopeptide repeat domain 126 155 IPR002885 -
Pvu9g1370 693 Pfam PPR repeat family 557 603 IPR002885 -
Pvu9g1370 693 Pfam PPR repeat family 126 170 IPR002885 -
Pvu9g1370 693 Pfam PPR repeat family 458 504 IPR002885 -
Pvu9g1370 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 123 157 IPR002885 -
Pvu9g1370 693 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 258 IPR002885 -
Pvu9g1370 693 Pfam PPR repeat 632 654 IPR002885 -
Pvu9g1370 693 Pfam PPR repeat 226 251 IPR002885 -
Pvu9g1370 693 Pfam PPR repeat 431 454 IPR002885 -
Pvu9g1370 693 Pfam PPR repeat 327 357 IPR002885 -
Pvu9g1370 693 Pfam PPR repeat 100 122 IPR002885 -
Pvu9g1370 693 Pfam PPR repeat 198 220 IPR002885 -
Pvu9g1370 693 Pfam PPR repeat 358 385 IPR002885 -
Pvu9g1370 693 Gene3D Tetratricopeptide repeat domain 511 623 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1370 Pvu-Chr9 19514665 19516969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1370 20 688 Glycoside Hydrolase AT3G49170 27.313 4.15e-83 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1370 - - gmx:100775626 1198.73