Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1335 ATGATTAAGCTTTGTTCCCATAGAAAAAAAATATTATCCGAATGGGTGTTGTTTGCGAAAATGCACAGCACAAGTGAGGCGATTCAGGAGGTTGGAGAAGCGAGCGAGAGAGTGAGCAAAGTTATGATGACGTGTCCTACACTGGGACTTGACACTGCTCTTAATCAAACTGGAGTTAGAGTTTCCCCTGATTTAGTTGAAAATGTTCTCAAACGATTTGAGAATGCGGGCATGTCAGCATTTCGGTTCTTTGAGTGGTCAGAGAAGCAGAGAGGGTACTCACACAGCATAAGGGCATATCACTTGATGATTGAATCTTTGGCCAAGATTAGACAGTACCAGATTGTGTGGGACCTTGTTAATGCCATGAGGAAAAAGGGCATGCTAAATGTTGAGACTTTTTGCATCATGATGAGAAAGTATGCTAGGGCTAACAAGGTCGACGAGGCTGTTTACACCTTTAATGTTATGGATAAGTACGATGTGGTTCCAAATCTTGCTGCATTTAATGGTTTGTTGAGTGCTTTGTGCAAGTCCAACAATGTGAGGAAGGCTCAGGAGATTTTTGATGCTATGAAGAGTCGGTTTGTGCCAGACGCGAAAACTTATAGCATTTTGCTTGAGGGGTGGGGAAAAGCTCCCAATCTTCCCCGGGCAAGGGAGGTTTTTGGAGAGATGGTTCGTGCTGGGTGTGATCCTGATGTTGTTACTTATGGTATAATGGTTGATGTTCTTTGCAAAGCGGGGAGGGTTGATGAAGCTGTTGAGGTTGTGAAGGAAATGGATGAGAGCAATTGCAGGCCCACATCTTTCATTTATAGTGTTCTGATTCATACTTATGGAGTGGAGCACCGGATTGAAGATGCTATTGATACATTCCAGGAGATGGAGAGGAAGGGAATCAAGGCTGATGTTGTGGTGTATAATGCCTTGATTGGTGCCTTTTGTAAAGTAAATAAGTTTAAAAATGTGCATAGGGTCTTGCAGGAGATGGAGATCAATGGCGTTGCTCCTAATTCAAGGACCTGCAATGTTATCATAAGCAGTATGATTGGTCAGGGGCAGACAGATAGAGCTTTTAGAGTTTTCCGCCGGATGATCAAGTTATGTGAACCGGATGCTGACACTTATACAATGATGATAAAAATGTTTTGTGAGAAAAATGATGTGGAGATGGCTTTGAGAATATGGAAGTTTATGAAGTCAAAACAATTTGTTCCAAGCATGCACACCTTTTCTGCCCTTGTCAAGGGGTTATGTGAAAAAGGTGATGCTGCAAAAGCTTGTGTTGTGCTGGAAGAGATGATAGAGAAAGGAATTCGACCATCACGTATTACATTTGGGAGGTTAAGACAGTTGCTTTTAAAGGAAGGGAGAGAGGATGTGCTCAAATTTCTTCATGAGAAAATGAATGTTCTTGTCAAGGAGCCTTTATATGATTAA 1443 0.4193 MIKLCSHRKKILSEWVLFAKMHSTSEAIQEVGEASERVSKVMMTCPTLGLDTALNQTGVRVSPDLVENVLKRFENAGMSAFRFFEWSEKQRGYSHSIRAYHLMIESLAKIRQYQIVWDLVNAMRKKGMLNVETFCIMMRKYARANKVDEAVYTFNVMDKYDVVPNLAAFNGLLSALCKSNNVRKAQEIFDAMKSRFVPDAKTYSILLEGWGKAPNLPRAREVFGEMVRAGCDPDVVTYGIMVDVLCKAGRVDEAVEVVKEMDESNCRPTSFIYSVLIHTYGVEHRIEDAIDTFQEMERKGIKADVVVYNALIGAFCKVNKFKNVHRVLQEMEINGVAPNSRTCNVIISSMIGQGQTDRAFRVFRRMIKLCEPDADTYTMMIKMFCEKNDVEMALRIWKFMKSKQFVPSMHTFSALVKGLCEKGDAAKACVVLEEMIEKGIRPSRITFGRLRQLLLKEGREDVLKFLHEKMNVLVKEPLYD* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1335 480 PANTHER OS03G0761300 PROTEIN 10 477 - -
Pvu9g1335 480 Pfam PPR repeat 133 160 IPR002885 -
Pvu9g1335 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Pvu9g1335 480 Gene3D Tetratricopeptide repeat domain 331 479 IPR011990 GO:0005515
Pvu9g1335 480 Pfam PPR repeat 230 261 IPR002885 -
Pvu9g1335 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Pvu9g1335 480 SUPERFAMILY TPR-like 95 397 IPR011990 GO:0005515
Pvu9g1335 480 TIGRFAM PPR: pentatricopeptide repeat domain 168 195 IPR002885 -
Pvu9g1335 480 TIGRFAM PPR: pentatricopeptide repeat domain 410 443 IPR002885 -
Pvu9g1335 480 TIGRFAM PPR: pentatricopeptide repeat domain 133 165 IPR002885 -
Pvu9g1335 480 TIGRFAM PPR: pentatricopeptide repeat domain 272 305 IPR002885 -
Pvu9g1335 480 TIGRFAM PPR: pentatricopeptide repeat domain 376 408 IPR002885 -
Pvu9g1335 480 TIGRFAM PPR: pentatricopeptide repeat domain 342 368 IPR002885 -
Pvu9g1335 480 TIGRFAM PPR: pentatricopeptide repeat domain 236 269 IPR002885 -
Pvu9g1335 480 TIGRFAM PPR: pentatricopeptide repeat domain 306 339 IPR002885 -
Pvu9g1335 480 TIGRFAM PPR: pentatricopeptide repeat domain 202 235 IPR002885 -
Pvu9g1335 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Pvu9g1335 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Pvu9g1335 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Pvu9g1335 480 Pfam PPR repeat family 164 209 IPR002885 -
Pvu9g1335 480 Pfam PPR repeat family 372 420 IPR002885 -
Pvu9g1335 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Pvu9g1335 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 195 IPR002885 -
Pvu9g1335 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Pvu9g1335 480 Pfam Pentatricopeptide repeat domain 293 349 IPR002885 -
Pvu9g1335 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 369 IPR002885 -
Pvu9g1335 480 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 10 477 - -
Pvu9g1335 480 Gene3D Tetratricopeptide repeat domain 19 194 IPR011990 GO:0005515
Pvu9g1335 480 Gene3D Tetratricopeptide repeat domain 264 330 IPR011990 GO:0005515
Pvu9g1335 480 Gene3D Tetratricopeptide repeat domain 195 263 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1335 Pvu-Chr9 19034521 19037644 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1335 91 468 Glycosyltransferase AT1G05670 24.374 2.19e-32 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1335 - - gmx:100790096 894.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1335 9 19034521 19037644 Pvu9g1335 9 19034521 19037644 ECH