Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1307 ATGGCGCGTAGGGTTTCGATTAGTTCCTTCTTCTTCGTGTTTGCACTTTCTCTTATCGCGTCTCAGATCTCTGCTGAGGAGTCCTCTGAGACTAAGGAATTCGTGCTCACACTGGATCACACCAACTTTCACGACACTGTCAGCAAGCACGATTTCATTGTTATCGAGTTCTACGCTCCATGGTGTGGCCACTGCAAGAAGCTTGCTCCCGAGTTTGAGAAAGCTGCTTCTATCTTGAGCAGTCATGATCCTCCGATTGTTTTGGCTAAAGTTGACGCCAATGAAGAGAAGAACAAAGAACTTGCAATGGAATATGATGTTAAGGGATACCCGACAATTAAGATTGTGAGGAATGGGGGAAAGAATATTCAAGAATACAAGGGTCCTCGTGAAGCCGATGGCATAGTTGACTATTTGAAGAAACAGAATGGTCCGGCTTCAACAGAAATTAAATCTGCTGATGAAGCTACAGCTTTGATTGGTGAAAATAAAATTGCTATTGTTGGAGTTTTCCCGAAATTTTCTGGGGAGGAGTTTGATAACTTTATTGCCTTAGCAGAGAAGTTGCGTGCTGAGTATGACTTTGGTCACACTCTGAATGCCAAACACCTTCCAAGAGGTGAATCATCAGTCGCTGGCCCTTTAATTAGGTTATTCAAGCCGTTCGATGAACTTTTTGTTGACTCCAAGGATTTCCATGTGGATACCCTAGAGAAATTTGTTGAGGAGTCCAGTACCCCTGTCGTTACTGTCTTTAACAATGATCCTAATAATCACCCTTTTGTTGTTAAATTCTTCAACAGCCCCAATGCAAAGGCAATGATGTTCATCAACTTCACTGCTGAAAGTGCTGAATCTTTCAAATCAAAATACCGTGAAGCTGCTGAGCAATATAAACAACAGGGTGTAAGCTTTCTGGTTGGAGATGTTGAGTCTAGTCAAGGAGCTTTCCAGTATTTTGGACTGAAGGAAGAACAAGTACCTTTAATTATCATACAACATAATGACGGAAAGAAATTTTTTAAATCCAATTTGGAAGCCGACCACATTCCAACTTGGTTGAAGGCATACAAGGAGGGTAATATTGCACCATATGTGAAATCTGAACCTATTCCTGAAACTAACAATGAACCAGTTAAAGTGGTAGTTGGGGAGAATCTCCAGGACATCGTTTTCAAGTCTGGGAAGAATGTTCTGCTGGAGTTTTACGCTCCCTGGTGTGGTCATTGCAAACAGTTGGCTCCTATATTGGAGGAAGTTGCTATCTCATATCAAAGTGATGCTAATGTTATCATTGCCAAACTGGATGCAACTGCCAACGATATCCCAAGTGATATCTTTGAGGTCCAAGGTTATCCAACCCTGTACTTCAGGTCATCAAGTGGAACTCTATCACAATACGACGGTGGTAGGACCAAGGAAGACATCATAGAATTCATTGAAAAGAACCGGGACAAACCTGCCCAGCAAGAACAAGATAAACCTGCTCATCAAGAACAAGTAAAAGATGAGCAAGAAACAGGAAAAGATGAGCTTTGA 1539 0.4178 MARRVSISSFFFVFALSLIASQISAEESSETKEFVLTLDHTNFHDTVSKHDFIVIEFYAPWCGHCKKLAPEFEKAASILSSHDPPIVLAKVDANEEKNKELAMEYDVKGYPTIKIVRNGGKNIQEYKGPREADGIVDYLKKQNGPASTEIKSADEATALIGENKIAIVGVFPKFSGEEFDNFIALAEKLRAEYDFGHTLNAKHLPRGESSVAGPLIRLFKPFDELFVDSKDFHVDTLEKFVEESSTPVVTVFNNDPNNHPFVVKFFNSPNAKAMMFINFTAESAESFKSKYREAAEQYKQQGVSFLVGDVESSQGAFQYFGLKEEQVPLIIIQHNDGKKFFKSNLEADHIPTWLKAYKEGNIAPYVKSEPIPETNNEPVKVVVGENLQDIVFKSGKNVLLEFYAPWCGHCKQLAPILEEVAISYQSDANVIIAKLDATANDIPSDIFEVQGYPTLYFRSSSGTLSQYDGGRTKEDIIEFIEKNRDKPAQQEQDKPAHQEQVKDEQETGKDEL* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1307 512 TIGRFAM pdi_dom: protein disulfide-isomerase domain 40 142 IPR005788 GO:0003756
Pvu9g1307 512 TIGRFAM pdi_dom: protein disulfide-isomerase domain 383 483 IPR005788 GO:0003756
Pvu9g1307 512 Pfam Thioredoxin 35 141 IPR013766 -
Pvu9g1307 512 Pfam Thioredoxin 379 482 IPR013766 -
Pvu9g1307 512 ProSitePatterns Thioredoxin family active site. 399 417 IPR017937 -
Pvu9g1307 512 SUPERFAMILY Thioredoxin-like 346 484 IPR036249 -
Pvu9g1307 512 MobiDBLite consensus disorder prediction 481 512 - -
Pvu9g1307 512 ProSiteProfiles Thioredoxin domain profile. 14 144 IPR013766 -
Pvu9g1307 512 PANTHER PROTEIN DISULFIDE-ISOMERASE 10 499 - -
Pvu9g1307 512 ProSitePatterns Thioredoxin family active site. 54 72 IPR017937 -
Pvu9g1307 512 Gene3D Glutaredoxin 143 247 - -
Pvu9g1307 512 PANTHER PROTEIN DISULFIDE ISOMERASE 10 499 - -
Pvu9g1307 512 CDD PDI_b'_family 262 358 - -
Pvu9g1307 512 SUPERFAMILY Thioredoxin-like 245 376 IPR036249 -
Pvu9g1307 512 SUPERFAMILY Thioredoxin-like 148 247 IPR036249 -
Pvu9g1307 512 Gene3D Glutaredoxin 248 372 - -
Pvu9g1307 512 Pfam Thioredoxin-like domain 171 355 - -
Pvu9g1307 512 CDD PDI_b_family 147 243 - -
Pvu9g1307 512 Gene3D Glutaredoxin 20 142 - -
Pvu9g1307 512 CDD PDI_a_PDI_a'_C 378 480 - -
Pvu9g1307 512 ProSiteProfiles Thioredoxin domain profile. 357 485 IPR013766 -
Pvu9g1307 512 TIGRFAM ER_PDI_fam: protein disulfide isomerase 35 512 IPR005792 GO:0003756
Pvu9g1307 512 PRINTS Thioredoxin family signature 53 61 - -
Pvu9g1307 512 PRINTS Thioredoxin family signature 61 70 - -
Pvu9g1307 512 PRINTS Thioredoxin family signature 106 117 - -
Pvu9g1307 512 CDD PDI_a_family 36 139 - -
Pvu9g1307 512 SUPERFAMILY Thioredoxin-like 35 145 IPR036249 -
Pvu9g1307 512 Gene3D Glutaredoxin 373 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1307 Pvu-Chr9 18775225 18779372 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1307 K09580 - gmx:100170705 910.598