Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1299 ATGCTTCCGGGTCTTACTAACCAACGCACCCACACTCACTACTCTCAATCTCTCTTTCGTCTTCTCAAACGGAACCACTCTCAGTTCCGTCCAGGAGATAAAAAAACGATGCCGTTTCGGTCTCCACCGAGGTCGAAACTATCAACCAAGCTCCTCAACATAACCATATCTTTGTTGTGCAAAAAGAAGCAAATATCCAAAGCCGAATCCGTAATAACCGACGGCATAAGAATCGGCGTGCTACCTGACGCGGTCACATACAACACCCTAATTGATGCCTACTGTCGTTTCGCCTCCATCGATGTCGCTTATTCCGTCCTTGCGCGAATGCGCGAAGCAGGGATTCCCCCCGACGTCGTTTCGTACAATTCGTTAGTCTCCGGCGCCGTCAGAAAATGTCTGCTCTCCAAGTCCATCGACCTGTTCGAGGAAATGATGGCGAGTGGGGTAACCCCCGACGCGTGGAGCCACAACATCCTAATGCACTGTCTGTTCAAGCTCGGAAAGCCCTACGAGGCCAATCGCGTTTTCAAAGAATCCGTTATCCGCGGCGAGGTTCACGCCACTACTTACAACGTCATGATCAACGGTCTCTGCAAGAACGGCTACGTCTCCCACGCCTTGAGCCTATTCAGGAACTTACAGAGGCACGGTTTCGTGCCTCAGGTTTTGACCTACAACGCGCTTATCAACGGCCTTTGCAAGGCCAAGCGGTTGAAGGACGCGCGGAAGGTGCTCAAGGAGTTTGGGGAATCCGGTTACGAACCGAATGCGATTACTTACACCACCGTCATGAAGTGCTGCTTCCGGTGCGGTTATTTCGAGCAAGGGTTGGAGATTTTGTCGGAGATGAGGAATTTAGGGTTCACGTTTGACGGATTCGCGTATTGCACGGTTATCGCGGCGATGATCAAGACTGGCCGGATGCGCGAGGCGGAGGAGATAATTGAAGTCATGGTGAGTTCCGGCATTCGGCCGGATCTCGTGTCGTATAACACTTTGATTAACCTTTATTGCAGGCAGGGGAGGTTGGAGGATGCATTGAAATTGTTGGATGAGATTGAGGAGGAGGGCTTGGAGTGTGATCAGTACACGCATACTATTATTGTTGATGGATTGTGTAAGGCTGGTGATTTTGATGGTGCTCAGAGGCACTTGAATTATATGAATACATTAGGGTTTGGATATAATTTGGTTGCGTTTAATTGTATGCTTGATGGCTTGGGGAAGGCTGGACATATCGATCATGCTTTGAAGTTGTTTGAGATGATGGAGGTGAAGGATTCGTTTACTTATACTATATTGGTGCACAACCTTTGCAAGGCGGGGAGCTTCCTTTCTGCCTCGAAGGTGCTGGTTTCGTGTTTGAAATGTGGGTACCAGGTGTTGAGGGCCACTCAGCGGGCTGTTCTTGATGGCCTCCGGAGTATTGGGTTTACTAATGAAGAGAGGAAGCTTAGGAAGAGGATCAGATTGGCACGGCTTATGACTGGATAG 1497 0.4957 MLPGLTNQRTHTHYSQSLFRLLKRNHSQFRPGDKKTMPFRSPPRSKLSTKLLNITISLLCKKKQISKAESVITDGIRIGVLPDAVTYNTLIDAYCRFASIDVAYSVLARMREAGIPPDVVSYNSLVSGAVRKCLLSKSIDLFEEMMASGVTPDAWSHNILMHCLFKLGKPYEANRVFKESVIRGEVHATTYNVMINGLCKNGYVSHALSLFRNLQRHGFVPQVLTYNALINGLCKAKRLKDARKVLKEFGESGYEPNAITYTTVMKCCFRCGYFEQGLEILSEMRNLGFTFDGFAYCTVIAAMIKTGRMREAEEIIEVMVSSGIRPDLVSYNTLINLYCRQGRLEDALKLLDEIEEEGLECDQYTHTIIVDGLCKAGDFDGAQRHLNYMNTLGFGYNLVAFNCMLDGLGKAGHIDHALKLFEMMEVKDSFTYTILVHNLCKAGSFLSASKVLVSCLKCGYQVLRATQRAVLDGLRSIGFTNEERKLRKRIRLARLMTG* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1299 498 TIGRFAM PPR: pentatricopeptide repeat domain 120 154 IPR002885 -
Pvu9g1299 498 TIGRFAM PPR: pentatricopeptide repeat domain 225 258 IPR002885 -
Pvu9g1299 498 TIGRFAM PPR: pentatricopeptide repeat domain 295 327 IPR002885 -
Pvu9g1299 498 TIGRFAM PPR: pentatricopeptide repeat domain 329 362 IPR002885 -
Pvu9g1299 498 TIGRFAM PPR: pentatricopeptide repeat domain 259 290 IPR002885 -
Pvu9g1299 498 TIGRFAM PPR: pentatricopeptide repeat domain 190 222 IPR002885 -
Pvu9g1299 498 TIGRFAM PPR: pentatricopeptide repeat domain 399 427 IPR002885 -
Pvu9g1299 498 TIGRFAM PPR: pentatricopeptide repeat domain 85 119 IPR002885 -
Pvu9g1299 498 TIGRFAM PPR: pentatricopeptide repeat domain 156 181 IPR002885 -
Pvu9g1299 498 Gene3D Tetratricopeptide repeat domain 184 251 IPR011990 GO:0005515
Pvu9g1299 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Pvu9g1299 498 Pfam PPR repeat 259 289 IPR002885 -
Pvu9g1299 498 Pfam PPR repeat 295 324 IPR002885 -
Pvu9g1299 498 Pfam PPR repeat 156 179 IPR002885 -
Pvu9g1299 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 83 117 IPR002885 -
Pvu9g1299 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 152 IPR002885 -
Pvu9g1299 498 PANTHER ATPASE EXPRESSION PROTEIN 3 45 496 - -
Pvu9g1299 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Pvu9g1299 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Pvu9g1299 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Pvu9g1299 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Pvu9g1299 498 Gene3D Tetratricopeptide repeat domain 35 183 IPR011990 GO:0005515
Pvu9g1299 498 Gene3D Tetratricopeptide repeat domain 252 390 IPR011990 GO:0005515
Pvu9g1299 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Pvu9g1299 498 PANTHER OS02G0793200 PROTEIN 45 496 - -
Pvu9g1299 498 Gene3D Tetratricopeptide repeat domain 391 496 IPR011990 GO:0005515
Pvu9g1299 498 Pfam PPR repeat family 397 441 IPR002885 -
Pvu9g1299 498 Pfam PPR repeat family 326 375 IPR002885 -
Pvu9g1299 498 Pfam PPR repeat family 189 235 IPR002885 -
Pvu9g1299 498 Pfam PPR repeat family 82 128 IPR002885 -
Pvu9g1299 498 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1299 36 490 Glycosyltransferase AT1G05670 26.998 2.51e-40 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1299 - - gmx:100808229 774.237