Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1259 ATGAAGGTGAGCACGTTAGACGCAGCGTTGCAGCGGTGCCAATGGGCGAGGCACTTCAAACAGATTCTCTCACAAACGATCCTCACCGGCCTCATCTCAGACCCCTACGCCGCAAGCAGACTCATAAACTTCTCCTCTCGCTCCGCTCTCGTTCCCTTCCACTATTCCCTCCGAATCTTCCACCATCTTCACAACCCCAACGCATTCACATGGAACACCATCATGCGCGCCCACTTCGAACTCCAAAACAACCCCCACCAAGCACTCACACTCTACAAACTCTTCCTTGCGAAACACGCAAAACCCGATAACTACACTTACCCAACTCTCCTTCAATGCTGCGTTGCCCGGGTGTCCGAGTTCGAGGGAAGGGAGCTGCACGCACATGTCGTGAGGTTTGGTTTCCATCAAGATGCGTACGTCCGGAACACGCTGATCAACTTGTATGCTGTATGTGGGACCATGTCCGCTGCGCGCCAGGTGTTTGAGGAAAGTCCTGTGCTGGATTTGGTCTCTTGGAATACTGTTTTGGCCGGGTATGTTCAGGCGGGAAATGTGGAGGAGGCGGAATGTCTGTATAAGGGAATGCCGGAGAAGAACACCATTGCTTCGAATTCCATGATTGTGCTCTTTGGAAGGAAGGGGTGTGTGGAGAAGGCGCGGCGGATTTTTGATGAGGTTCGAGTGAGGGATATGGACATGGTGTCGTGGAGTGCGATGGTTTCTTGTTATGAGCAGAATGAAATGTGTGAGGAGGCGTTGGTTTTGTTTGTGGAGATGAAGGCAAATGGGGTGGCAGTGGATGAGGTGGTTGTGGTTAGTGTTGTTTCCGCGTGTTCTCGAATTTTGAATGCTGAGATGGGAAGGTTGGTGCATGGTTTGGCGGCGAAAGTTGGGGTTGACGATTATGTTAGTCTTAAGAATGCATTGATACATTTGTATTCTAGTTGTGGGGAGATAGTGGATGCGCAAAGAATTTTTGATGATGGTGGTGTTCTCTTGGATCTAATATCTTGGAACTCGATGATTTCTGGGTACTTGAGGTGTGGTTCAATTGAAGATGCTGAGCAGTTGTTTTATTCCATGCCGGAGAAGGATGTTGTGTCTTGGAGTGCCATGATATCTGGTTATGCTCAACAGGAATTCTTCTCGGAAGCGTTGGCATTGTTCCAAGAAATGCAGCTTCATGGAGCTAGGCCAGACGAAACTGCCCTAGTCAGTGCCATCTCGGCTTGCACCCATCTGGCTGCTTTGGACTTAGGAAAATGGATTCATGCGTATATAAGTAAAAATAAATTACAGGTTAACATTATTCTGAGCACGACGCTTATAGACATGTATGTGAAATGCGGGTGTGTGGAAAATGCATTGGAGGTTTTCTATGCGATGGAGACAAAGGGGGTTTCTACCTGGAATGCTATTATTCTTGGGTTGGCAATGAATGGTTTAGTAGAACAGTCACTCAGCATGTTTGCAGATATGAAAAAAACTAGGACACTTCCTAATGAGATAACATTTATGGGAGTTCTTGGGGCCTGTCGGCACATGGGCCTAGTCGATGAGGGGCGTCACTACTTTAGTTCCATGATCCACGAACACAAAATAGAGCCTAATATTAAGCACTACGGATGCATGGTTGATCTTTTTGGACGTGCAGGTTTGCTTAAAGAAGCGGAGGAACTGATTGAGAGTATGCCTATGGCACCTGATGTTGCCACTTGGGGTGCTTTGCTTGGGGCTTGTAGAAAACACCATGACAATGAAATAGGGGAGAGGGTGGGCAAAAAACTTATTCAGCTTCAGCCTGACCATGATGGTTTCCATGTACTATTGTCAAATATATATGCTTCAAAAGGAAATTGGGGCAATGTTCTCGAAATTAGGGGAATTATGGCACAACATGGGGTGGTAAAGACACCTGGTTGTAGCATGATTGAAGCAAATGGGATAGTTCATGAATTTTTGGCTGGAGATAAGACACACCCACAAATAAGTGATATTGAGCACATGTTAGATGTAGTGGCCGCAAAATTAAAGATTGAGGGCTATGTACCAACCACAAGTGAGGTTTCACTAGACATAGACGATGAAGAGAAGGAAACTGCACTTTTCAGGCACAGTGAGAAACTTGCAGTCGCCTTTGGACTTATCACTATTGCTCCACCAACTCCAATCAGAGTTATGAAGAACTTGCGCATATGTAATGATTGCCACACTGTTGTGAAGTTAATCTCCAAAGCATTTGATCGCGAGATTGTTGTAAGGGATCGTCATCGCTTTCACCACTTTAGGCATGGAGCTTGTTCCTGCATGGATTTTTGGTAA 2325 0.4624 MKVSTLDAALQRCQWARHFKQILSQTILTGLISDPYAASRLINFSSRSALVPFHYSLRIFHHLHNPNAFTWNTIMRAHFELQNNPHQALTLYKLFLAKHAKPDNYTYPTLLQCCVARVSEFEGRELHAHVVRFGFHQDAYVRNTLINLYAVCGTMSAARQVFEESPVLDLVSWNTVLAGYVQAGNVEEAECLYKGMPEKNTIASNSMIVLFGRKGCVEKARRIFDEVRVRDMDMVSWSAMVSCYEQNEMCEEALVLFVEMKANGVAVDEVVVVSVVSACSRILNAEMGRLVHGLAAKVGVDDYVSLKNALIHLYSSCGEIVDAQRIFDDGGVLLDLISWNSMISGYLRCGSIEDAEQLFYSMPEKDVVSWSAMISGYAQQEFFSEALALFQEMQLHGARPDETALVSAISACTHLAALDLGKWIHAYISKNKLQVNIILSTTLIDMYVKCGCVENALEVFYAMETKGVSTWNAIILGLAMNGLVEQSLSMFADMKKTRTLPNEITFMGVLGACRHMGLVDEGRHYFSSMIHEHKIEPNIKHYGCMVDLFGRAGLLKEAEELIESMPMAPDVATWGALLGACRKHHDNEIGERVGKKLIQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGIVHEFLAGDKTHPQISDIEHMLDVVAAKLKIEGYVPTTSEVSLDIDDEEKETALFRHSEKLAVAFGLITIAPPTPIRVMKNLRICNDCHTVVKLISKAFDREIVVRDRHRFHHFRHGACSCMDFW* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1259 774 Pfam DYW family of nucleic acid deaminases 682 774 IPR032867 GO:0008270
Pvu9g1259 774 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Pvu9g1259 774 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 365 IPR002885 -
Pvu9g1259 774 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Pvu9g1259 774 Pfam E+ motif 651 672 IPR046849 -
Pvu9g1259 774 TIGRFAM PPR: pentatricopeptide repeat domain 235 268 IPR002885 -
Pvu9g1259 774 TIGRFAM PPR: pentatricopeptide repeat domain 441 469 IPR002885 -
Pvu9g1259 774 TIGRFAM PPR: pentatricopeptide repeat domain 337 368 IPR002885 -
Pvu9g1259 774 TIGRFAM PPR: pentatricopeptide repeat domain 171 200 IPR002885 -
Pvu9g1259 774 TIGRFAM PPR: pentatricopeptide repeat domain 368 402 IPR002885 -
Pvu9g1259 774 TIGRFAM PPR: pentatricopeptide repeat domain 470 503 IPR002885 -
Pvu9g1259 774 Gene3D Tetratricopeptide repeat domain 201 290 IPR011990 GO:0005515
Pvu9g1259 774 Gene3D Tetratricopeptide repeat domain 291 419 IPR011990 GO:0005515
Pvu9g1259 774 Gene3D Tetratricopeptide repeat domain 3 121 IPR011990 GO:0005515
Pvu9g1259 774 Gene3D Tetratricopeptide repeat domain 122 200 IPR011990 GO:0005515
Pvu9g1259 774 Pfam PPR repeat 542 566 IPR002885 -
Pvu9g1259 774 Pfam PPR repeat 143 164 IPR002885 -
Pvu9g1259 774 Pfam PPR repeat 235 265 IPR002885 -
Pvu9g1259 774 Pfam PPR repeat 171 200 IPR002885 -
Pvu9g1259 774 Pfam PPR repeat 205 230 IPR002885 -
Pvu9g1259 774 Pfam E motif 584 646 IPR046848 -
Pvu9g1259 774 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Pvu9g1259 774 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 6 748 - -
Pvu9g1259 774 Pfam PPR repeat family 365 411 IPR002885 -
Pvu9g1259 774 Pfam PPR repeat family 66 114 IPR002885 -
Pvu9g1259 774 Pfam PPR repeat family 467 513 IPR002885 -
Pvu9g1259 774 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Pvu9g1259 774 Gene3D Tetratricopeptide repeat domain 438 653 IPR011990 GO:0005515
Pvu9g1259 774 PANTHER OS03G0314400 PROTEIN 6 748 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1259 Pvu-Chr9 18193534 18195858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1259 1 774 Glycoside Hydrolase AT3G49170 30.918 3.09e-126 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1259 - - gmx:100789149 1366.67