Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1251 ATGGATTTGAACCAAATCCAGTTAGCTTTACGCTGTTGTGGGCGGTTTCAAGCTATCAAACATGCTAAATCACTTCATTCCCATATAATAAAACTTGGTCTTTTCAGTCACGTTTTTCTCCTAAATAACATTATCTCTGTCTATGCAAAATGCTCCCAATTCGACGATGCACGAACCCTTTTCGACGATATGCCTCACAGGAACATAATTTCTTACACAACGATGGTCTCTGCATTCACCAATTCCGGGAGACCCCAAGATGCTCTCACACTCTACAACCACATGCTGGAATCTAAAACAGTGCAACCCAATCAGTTCTTGTACTCAGCGGTTCTCAAGGCATGTGGAGTCGCTGGTGATGTTGAATTGGGCAAGTTGGTTCACCGACGTGTATATCAGGCTAGGTTAGAGTATGACACTGTTCTGATGAATGCCCTCATGGACATGTACGTCAAATGTAGAAGGTTGGGTGATGCAAATCGAGTTTTCTATGACATGCCGTGTAAAAATTCTACTTCATGGAACACTCTCATTCTAGGGCATGCCAAACAGGGTTTGATGAAGGATGCGTTGGATCTGTTTGATCAAATGCCAGAACCAGACCTTGTGTCTTGGAACAGCATCATTGCTGGTCTTGCAGATACTTCTAGCTTCCAGGCATTGCAATTTGTTTCTATGATGCATATGAAGGGCCTTAAACTTGATGCATTCACATTCCCATGTGCCCTCAAAGCGTGTAGTCTACTTGGCAAGTTAACCGCGGGGAGACAGATTCATTGTTGCATTATCAAGTCAGGGTTTGAGTGTAGCTTTTATTGCATATCAGCATTGATTGATATGTATTCGAATTGCAAGCTATTGAATGATGCAATGAATATATTTGATAACAAATCTCCTCTTGCAGAAAGCTTGGCAGTATGGAATTCCATGCTTTCAGGGTTTGTTGCCAATGGAGATTGGTGGAAAGCTCTCAGTATGATTGCTCATATGCATCATTCTGGTGCACAGTTTGATCCCTATACCTTTAGTGTTGCTTTAAAGGTCTGCATCGAGTTTGAAAACTTGAGGTTGGCATCTCAAGTGCATGGATTGGTCATCACTGGTGGCTATGAGTTAGACTATGTTATTGGAAGCATTTTCATTGATCTATATGTGAAACAGGGCAATATTAACAATGCATTGAAATTGTTTGAAAGGTTGCCATATAAAGATGTTGTGGCTTGGTCTAGTTTGATTGTTGGTTGTGCTAGATTTGGTCTAGCTACACTAGCTTTTTCCCTCTTCATGGATATGGTTCATTTGGATCTTGAGATTGATCATTTTGTCCTTTCAATTGTTCTGAAAGTTTCTTCAAGTTTGGCATCGCTTCCAACTGGCAAACAAATTCATTCTTTTTGTCTTAAGAAGGGATATGAATCAGAGCGAGTTATTACAACTGCTCTTACTGATATGTATGCAAAATGTGGTGAGATTGAGGATGCCTTAGCTTTGTTTAATTGTCTTTCGGAAGTAGATACCTTGAGTTGGACTGGTATTATTGTGGGATGTGCACAAAATGGAAGAGAAGACAAGGCAATTAATCTTCTGCATAAGATGATTGAGTCAGGTACAAAGCCAAATGAGCTCACCATTATAGGTGTTCTGTCTGCATGTAGACATGCAGGCCTAGTAGAAGAGGCATGGACTATATTTAAGTCTACTGAAACAAAGCATGGATTGACACCATGCCCTGAACATTACAATTGTATGGTTGATATATTTGCTCAAGCAGGACGTTTTAAAGAAGCAATAAACTTGATTAATGACATGCCATATAAGCCCGACAAAACCATATGGTGTTCCTTGCTTGGTGCTTGTGGAAATTACAAGAATCGACATCTTGCAAATATTGTTGCTGAGCATCTTCTTGCTACCTCACCTGAAGATGCTTCTGTGTATATAATGCTGTCAAATGTTTATGCATCACTTGGAATGTGGGATAATGTAAGCAAAGTACGAGAAGCTGTCAAAAAAGTAGGTATAAAAGGAGCTGGAAAAAGCTGGATCGAGATCTTTAGCTGA 2061 0.4013 MDLNQIQLALRCCGRFQAIKHAKSLHSHIIKLGLFSHVFLLNNIISVYAKCSQFDDARTLFDDMPHRNIISYTTMVSAFTNSGRPQDALTLYNHMLESKTVQPNQFLYSAVLKACGVAGDVELGKLVHRRVYQARLEYDTVLMNALMDMYVKCRRLGDANRVFYDMPCKNSTSWNTLILGHAKQGLMKDALDLFDQMPEPDLVSWNSIIAGLADTSSFQALQFVSMMHMKGLKLDAFTFPCALKACSLLGKLTAGRQIHCCIIKSGFECSFYCISALIDMYSNCKLLNDAMNIFDNKSPLAESLAVWNSMLSGFVANGDWWKALSMIAHMHHSGAQFDPYTFSVALKVCIEFENLRLASQVHGLVITGGYELDYVIGSIFIDLYVKQGNINNALKLFERLPYKDVVAWSSLIVGCARFGLATLAFSLFMDMVHLDLEIDHFVLSIVLKVSSSLASLPTGKQIHSFCLKKGYESERVITTALTDMYAKCGEIEDALALFNCLSEVDTLSWTGIIVGCAQNGREDKAINLLHKMIESGTKPNELTIIGVLSACRHAGLVEEAWTIFKSTETKHGLTPCPEHYNCMVDIFAQAGRFKEAINLINDMPYKPDKTIWCSLLGACGNYKNRHLANIVAEHLLATSPEDASVYIMLSNVYASLGMWDNVSKVREAVKKVGIKGAGKSWIEIFS* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1251 686 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Pvu9g1251 686 Pfam PPR repeat family 68 115 IPR002885 -
Pvu9g1251 686 Pfam PPR repeat family 306 349 IPR002885 -
Pvu9g1251 686 Gene3D Tetratricopeptide repeat domain 552 684 IPR011990 GO:0005515
Pvu9g1251 686 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 85 681 - -
Pvu9g1251 686 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 10 122 - -
Pvu9g1251 686 PANTHER BNAC03G28070D PROTEIN 10 122 - -
Pvu9g1251 686 PANTHER BNAC03G28070D PROTEIN 85 681 - -
Pvu9g1251 686 Gene3D Tetratricopeptide repeat domain 140 253 IPR011990 GO:0005515
Pvu9g1251 686 Gene3D Tetratricopeptide repeat domain 254 353 IPR011990 GO:0005515
Pvu9g1251 686 Gene3D Tetratricopeptide repeat domain 463 551 IPR011990 GO:0005515
Pvu9g1251 686 Gene3D Tetratricopeptide repeat domain 354 462 IPR011990 GO:0005515
Pvu9g1251 686 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Pvu9g1251 686 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Pvu9g1251 686 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 505 539 IPR002885 -
Pvu9g1251 686 Pfam E motif 622 683 IPR046848 -
Pvu9g1251 686 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 404 438 IPR002885 -
Pvu9g1251 686 Gene3D Tetratricopeptide repeat domain 2 138 IPR011990 GO:0005515
Pvu9g1251 686 SUPERFAMILY TPR-like 38 665 IPR011990 GO:0005515
Pvu9g1251 686 Pfam PPR repeat 406 433 IPR002885 -
Pvu9g1251 686 Pfam PPR repeat 379 401 IPR002885 -
Pvu9g1251 686 Pfam PPR repeat 173 199 IPR002885 -
Pvu9g1251 686 Pfam PPR repeat 508 536 IPR002885 -
Pvu9g1251 686 Pfam PPR repeat 479 501 IPR002885 -
Pvu9g1251 686 Pfam PPR repeat 142 169 IPR002885 -
Pvu9g1251 686 Pfam PPR repeat 579 604 IPR002885 -
Pvu9g1251 686 TIGRFAM PPR: pentatricopeptide repeat domain 42 69 IPR002885 -
Pvu9g1251 686 TIGRFAM PPR: pentatricopeptide repeat domain 306 334 IPR002885 -
Pvu9g1251 686 TIGRFAM PPR: pentatricopeptide repeat domain 70 101 IPR002885 -
Pvu9g1251 686 TIGRFAM PPR: pentatricopeptide repeat domain 508 541 IPR002885 -
Pvu9g1251 686 TIGRFAM PPR: pentatricopeptide repeat domain 580 603 IPR002885 -
Pvu9g1251 686 TIGRFAM PPR: pentatricopeptide repeat domain 173 198 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1251 Pvu-Chr9 18126069 18130194 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1251 1 684 Glycoside Hydrolase AT3G49170 29.353 1.02e-107 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1251 - - gmx:100780678 1214.13