Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1238 ATGCAAGATATCCCCTTCTATGTCCTTATACTTTCCCTCCTTCTAATTCCAACTTCTCTGGTTTCTCCTTTATACGATGGGCCCTTATATGACTTCACTGCCCACACTGAGTGCAAAGAGAAACCAGAGGAGCCACTTTATGGAGGAGGAGTTCTCAAGAGTCAGCAACGGTCTCCTCCTGGTCTTCAAGACAACATTGCCTCATCTTACGTTGTTAACAACACCTATGTGCCTTCACTCCTTCTCTATAATCTCACCCAGGGCACCATTTACACTTTTTCCGCATGGGTGAGAGTTAAAGGTTCAAGTTCGGGCATGATAAGGGCTACCCTGGAAACAGAGAAAGAGACGTATGATTGCATCGGGACAGTTTCAGCCAAGCTTGGATGCTGGTCATTTCTCAAGGGTGGTTTCGTTCTAACCTCGTCTTCAAATTTATCCGTCATCTTCTTCCAGAACGCGGATGGTAAAGACATCAATATAGAAGTTGCTAGTCCATCACTCCAGCCATTTACTAACCAACAATGGAGAATCAACCAACAGTATATGATCAATACTAAAAGAAAGCGTGCCGTCACTGTTCATGTGTCTGATAGCAACGGAAGAAGATTGCAAGGAGCTTCCGTCCGTATAGAGCAAATATCAAAAGACTTCCCTTTTGGATCTGCAATAGCAAAGACCATTCTTGGCAACTTACCCTATCAGAATTGGTTTGCGAAACGATTCAATGCCGCAGTCTTTGAAAATGAGCTCAAATGGTACGCCACAGAACCTGATGAAGGCAGGGTCAATTACACCATTTCAGATCAAATGCTACAATTTGTTAGAACAAACAATATCGTTGCCAGAGGGCACAACATATTTTGGGAAGACCCTAAATACACTCCTCCATGGGTTCTTAACCTTACTGGCATCCAGTTACAATCTGCTGTGAATTCCCGAATACACAGTCTCATGAGCCAATACAAAGATGAGTTCATACACTGGGACGTCAGCAATGAAATGCTTCATTTTGAGTTCTACGAGCAAAGGCTTGGATCTGATGCCACATTGCATTTTTTTGAGACTGCACATGAATCAGATCCATTATCAACCCTGTTCATGAATGACTTTAATGTTGTGGAAACATGCAGTGATGTAAATTCCACTGTAGACGCCTATATCTCACGGGTAAGAGAACTGCAACGAAATGGCATCTTTATGGATGGAATTGGCTTGGAGGGACACTTCACAGTACCCAATCCTCCCCTTATCAGAGCCATCCTAGACAAGTTGGCAACACTTGGACTTCCCATTTGGCTTACTGAGGTTGATATAAGCAAGACAATTGATAGAGATTCACAGGCGAAATATTTGGAGGAAGTTTTGAGGGAAGGATTCTCACATCCTTCTGTGAATGGGATAATGCTTTGGACTGCATATCATCCAAATGGGTGCTACCAAATGTGCCTCACAGACAATAATTTCAATAACCTGCCAGCAGGTGATACGGTGGACAAAGTTCTTCAAGAGTGGCAAACAGGTCGTGTAGAGGGAGTGGCAGATGTGCACGGTTCCTATAGCTTTTATGGCTTCTTAGGAGAATATTCTATTACTGTCAACTATGGCAACAGGACTACACATTCAACATTCTCCCTCTCTCCAGCTCAAGAAACTAGACATTTCACCATTACACTCTGA 1680 0.4315 MQDIPFYVLILSLLLIPTSLVSPLYDGPLYDFTAHTECKEKPEEPLYGGGVLKSQQRSPPGLQDNIASSYVVNNTYVPSLLLYNLTQGTIYTFSAWVRVKGSSSGMIRATLETEKETYDCIGTVSAKLGCWSFLKGGFVLTSSSNLSVIFFQNADGKDINIEVASPSLQPFTNQQWRINQQYMINTKRKRAVTVHVSDSNGRRLQGASVRIEQISKDFPFGSAIAKTILGNLPYQNWFAKRFNAAVFENELKWYATEPDEGRVNYTISDQMLQFVRTNNIVARGHNIFWEDPKYTPPWVLNLTGIQLQSAVNSRIHSLMSQYKDEFIHWDVSNEMLHFEFYEQRLGSDATLHFFETAHESDPLSTLFMNDFNVVETCSDVNSTVDAYISRVRELQRNGIFMDGIGLEGHFTVPNPPLIRAILDKLATLGLPIWLTEVDISKTIDRDSQAKYLEEVLREGFSHPSVNGIMLWTAYHPNGCYQMCLTDNNFNNLPAGDTVDKVLQEWQTGRVEGVADVHGSYSFYGFLGEYSITVNYGNRTTHSTFSLSPAQETRHFTITL* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1238 559 SUPERFAMILY Galactose-binding domain-like 84 161 IPR008979 -
Pvu9g1238 559 Gene3D - 66 164 - -
Pvu9g1238 559 Pfam Glycosyl hydrolase family 10 214 473 IPR001000 GO:0004553|GO:0005975
Pvu9g1238 559 PANTHER GLYCOSYL HYDROLASE FAMILY 10 PROTEIN 6 558 - -
Pvu9g1238 559 SUPERFAMILY (Trans)glycosidases 203 509 IPR017853 -
Pvu9g1238 559 SMART glyco_10 251 502 IPR001000 GO:0004553|GO:0005975
Pvu9g1238 559 Gene3D Glycosidases 207 514 - -
Pvu9g1238 559 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 205 501 IPR001000 GO:0004553|GO:0005975
Pvu9g1238 559 PANTHER GLYCOSYL HYDROLASE 6 558 IPR044846 GO:0004553|GO:0005975
Pvu9g1238 559 PRINTS Glycosyl hydrolase family 10 signature 282 294 IPR001000 GO:0004553|GO:0005975
Pvu9g1238 559 PRINTS Glycosyl hydrolase family 10 signature 326 337 IPR001000 GO:0004553|GO:0005975
Pvu9g1238 559 PRINTS Glycosyl hydrolase family 10 signature 364 375 IPR001000 GO:0004553|GO:0005975
Pvu9g1238 559 PRINTS Glycosyl hydrolase family 10 signature 397 409 IPR001000 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1238 Pvu-Chr9 17862728 17869481 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1238 26 559 Glycoside Hydrolase AT4G38650 63.755 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1238 - - vra:106762624 1035.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1238 9 17862728 17869481 Pvu9g1238 9 17862728 17869481 ECH