Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1231 ATGGGTTTCTTCGGCACCATATTTGGGTTTTTTGGCTTTGGATTTGGGATTTCCATCGGTCTTACTATTGGTTATTTTCTCTTCATTTATGTTCAACCCAGTGATGTTAAGGACCCTGAAATAAAACCATTGGCAGAGGAAGATTCAGAAAATGTAGAGCGAATGATTCCTGAAATACCACTTTGGATAAAGAATCCAGACTTTGATCGAGTTGATTGGCTTAACAAACTTGTTGAATATATGTGGCCATACCTAAACAAGGCTATATGCAAGACAGCAGAGACCATTGCAAAGCCTATAATTGATGAGCAAATACCACAGTATAAAATTGACTCTGTTGAATTTGAAGAGCTAACACTAGGGTCATTGCCGCCAACTTTTCAAGGAATGAAAGTTTACGAGACCGAAGAGAAAGAGTTAATCATGGAGGTTTCTGTAAAATGGGCAGCAAATCCTAATATCATTGTTGCTGTTAAGAAATTTGGGTTGAAAGCAACCATCCAGGTGATGGATCTGCAAGTTTTTGTTTTACCACGTATTACTTTGAAACCTTTGGTTCCAAGTTTTCCATGCTTTGCCAGTATTTATGTGTCTCTCATGGAAAAGCCCTATGTTGACTTTGGGCTGAAGCTTCTAGGGGCTGATCTTATGTCTATTCCTGTACTTTACAAGTTTGTTCAGGAACTTATCAAGGATCAAGTTGCAAATATGTATCTGTGGCCCAAAACTTTAGATGTTGAAGTTATGGATCCGACGAAAGCATTGAAGAAACCTGTTGGGATTTTAAATACAAAGGTGTTAAGAGCAATGAAGTTAAAGAAGAAAGATCTTCTGGGTGCATCTGACCCTTATGTGAAGTTAACACTTACCGATGATAAATTGACATCGAAAAAAACTACAGTAAAGCATAAGAACTTGAATCCTGAATGGAACGAGGAATTTAGCCTGGTTGTTAAAGATCCCGAGACCCAATCTCTAGAGTTTCATGTTTATGACTGGGAGCAGGTTGGGAAGCATGACAAGATGGGTATGAATATGATTCCTTTGAAAGATCTTGTATCCGAAGAACCTAAACTTTTTACTCTTGACCTTTTGAAAAACATGAATCCAAAGGATGCTCAAAATGAGAAGTCTAGAGGGCAAATTATTATGGAATTGACATATAAACCATTTAGGGCTGAAGACTTGGCCAAAAGTTTTAAACAAGCACACTCGATAAAAGATCCTCCCGAAGGCACTCCTCCTGGTGGAGGTTTACTTGTAGTTATAATCCATGAAGCTCAAGACGTTGAAGGAAAGTACCATACTAATCCCCACGTACGTCTTATTTTCAAAGGAGAAGAGAGAAGGACTAAGATAATGAAAAAAAGTAGAGATCCAAGATGGGAAGAAGAGTTTCAATTTTTGGTGGAAGAGCCTCCCACCAATGATAAATTACATGTGGAAGTTGTTAGCACTTCGTCGCGAAGCCTTCTACGTCAAAAGGAATCTTTGGGCTATGCTGACATTAGTCTTATGGACGTTGTTGCGAACAATAGAATCAACGAAAGACATCATCTTATAGACTCCAAGAATGGTCGTATCCAAATAGAACTACAATGGAGAGCTTCACAAGCTAATTAA 1623 0.3839 MGFFGTIFGFFGFGFGISIGLTIGYFLFIYVQPSDVKDPEIKPLAEEDSENVERMIPEIPLWIKNPDFDRVDWLNKLVEYMWPYLNKAICKTAETIAKPIIDEQIPQYKIDSVEFEELTLGSLPPTFQGMKVYETEEKELIMEVSVKWAANPNIIVAVKKFGLKATIQVMDLQVFVLPRITLKPLVPSFPCFASIYVSLMEKPYVDFGLKLLGADLMSIPVLYKFVQELIKDQVANMYLWPKTLDVEVMDPTKALKKPVGILNTKVLRAMKLKKKDLLGASDPYVKLTLTDDKLTSKKTTVKHKNLNPEWNEEFSLVVKDPETQSLEFHVYDWEQVGKHDKMGMNMIPLKDLVSEEPKLFTLDLLKNMNPKDAQNEKSRGQIIMELTYKPFRAEDLAKSFKQAHSIKDPPEGTPPGGGLLVVIIHEAQDVEGKYHTNPHVRLIFKGEERRTKIMKKSRDPRWEEEFQFLVEEPPTNDKLHVEVVSTSSRSLLRQKESLGYADISLMDVVANNRINERHHLIDSKNGRIQIELQWRASQAN* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1231 540 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Pvu9g1231 540 PRINTS C2 domain signature 277 289 IPR000008 -
Pvu9g1231 540 PRINTS C2 domain signature 304 317 IPR000008 -
Pvu9g1231 540 PRINTS C2 domain signature 326 334 IPR000008 -
Pvu9g1231 540 Pfam C2 domain 260 358 IPR000008 -
Pvu9g1231 540 Pfam C2 domain 419 516 IPR000008 -
Pvu9g1231 540 CDD C2 265 364 - -
Pvu9g1231 540 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 257 391 IPR035892 -
Pvu9g1231 540 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 1 536 - -
Pvu9g1231 540 SMART C2_3c 261 361 IPR000008 -
Pvu9g1231 540 SMART C2_3c 419 517 IPR000008 -
Pvu9g1231 540 ProSiteProfiles C2 domain profile. 401 518 IPR000008 -
Pvu9g1231 540 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 536 IPR045050 GO:0008289
Pvu9g1231 540 Gene3D C2 domain 256 409 IPR035892 -
Pvu9g1231 540 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Pvu9g1231 540 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 246 IPR039010 -
Pvu9g1231 540 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 535 IPR035892 -
Pvu9g1231 540 Gene3D C2 domain 419 538 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1231 Pvu-Chr9 17778175 17783906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1231 262 473 Lipid Metabolism Gene Families AT1G51570 26.778 2.26e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1231 - - gmx:100780850 933.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1231 9 17778175 17783906 Pvu9g1231 9 17778175 17783906 ECH