Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1230 ATGGAAACTCGTAGTCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCCTCGTCCATCACTCGTTCCGCCAAGCGTTCTCGTCTTTCTTCTTCCTCTTCTTCGATCCCGAACACCCCAACTGTTAATACACGTTCTCGTTCGGTCAGGACTAACACCACCACCACCACCACAACCACCAATTCCGTTTCTCTCATGGACCCCACCAACGAATCCTCCGGGTCAAGACGTGATCGCCGTGGCAAGAATTTAGAAAGGGACAATTCGGACAAAGGGAAGGAGAAAGAACAGGATGTTGGAATTAGGGATGTAGAAAGAGAGCGAGTCTTGGCGTTGAACATGGAGAGTGAAGGTGTTGGGGACGACGATGATAATTATAGTGACGGTGGTGTGCATCGGAGTTTGACGTCTGCTAGTACCCTTCAAGGGCTTCTTCGGAAACTTGGTGCTGGTTTGGATGATCTGCTTCCTGCCACGGCTATGGGTGGTTCTGCGTCCTCTTCTCATCTGAGTGGTAGACTCAAGAAAGTTCTGGCTGGATTGCGTGCTGAGGGAGAAGAAGGTCGTCAGCTCGAGGCATTGTCGCAGCTTTGTTTCATGCTTTCCATTGGCACCGAAGAATCCCTTAGTACGTTTTCCGTTGACTCGTTTGTTCCTGTGTTAGTGGGGTTGCTTAATCAAGAGAGCAACCCCGATGTTATGCTACTTGCGGCCAGGGCGCTTACCCATTTATGCGACGTTCTTCCCTCATCCTGCGCTGCTGTAGTGCATTACGGGGCAGTGTCTATATTCTGTGCGAGGCTGCTTACGATAGAGTATATGGACTTGGCTGAACAGTCTCTTCAAGCGCTAAAGAAGATTTCTCAGGAGCACCCAACTGCCTGTCTTCGAGCTGGAGCTCTGATGGCTGTACTTTCTTACTTGGACTTCTTCTCAACAGGAGTTCAGCGGGTAGCATTGTCTACTGCTGCAAATATGTGCAAAAAGCTTCCTCCTGATGCAGCTGACTTTGTAATGGAAGCTGTTCCTCTTTTGACAAACCTTCTTCAGTACCATGACTCCAAGGTTCTGGAACATGCCTCTGTTTGTCTGACTCGAATAGCGGAAGCATTTGCCTCATCTCCAGACAAATTAGATGAATTATGCAATCATGGACTGGTAACACAAGCTGCCTCTCTCATTTCTACCAGCAGTTCTGGAGGCGGTCAGGCTTCTCTCAGCACTCCAACATATACCGGTCTTATTCGCCTTCTTTCCACATGTGCCAGTGGATCCCCTCTTGGACCCAAAACATTACTTCTCCTTGGAATTAGTGGCATTCTGAAAGATATACTATCCGGTTCTGGTGTTTCTTCTATCACCTCTGTTTCACCAGCATTAAGTAGGCCGGCAGATCAGATATTTGAGATTGTGAATCTCGCAAATGAACTTCTGCCTCCATTGCCACATGGAACCATTTCTCTTCCTGTCAGCTCCAACTTGTTTGTGAAAGGGTATTTTGTGAAAAAATGTCCTTCTGGCAGTTCCGGACAAGAAGACACCACCAATGGAAATGTTCATGAGATATCAGCTCGTGAGAAATTATTAAACGATCAGCCGGAGTTACTTCAGCAATTTGGGATGGATCTCCTCCCAGTTTTAATGCAGATATATGGTGCCAGTGTCAATGGTCCTGTTCGCCACAGATGTCTTTCTGTCATTGGAAAATTGATGCATTTCAGCACAGCTGAGATGATCCAGTCTTTGTTGAGTGTAACAAATATATCAAGTTTCTTAGCTGGTGTGTTAGCATGGAAAGATCCGCATGTTTTGGTACCTGCCTTGCAGATTTCAGAAATTCTTATGGAAAAGCTTCCTGGAACTTTCTCTAAGATGTTTATCAGAGAAGGTGTGGTCCATGCAGTTGACCAACTTATTTTGGCTGGAAATTCAACTAATATATCTATACAAACATCTGCTGAGAAGGATAGTGATTCTGTATCTGGAACTCATTCGCGCCCCAGACACTATCGCCTGCGTAGTGGTAATTCAAATCCCGATGCAAACTATTTGGATGATTTGATGAAGAGTCCAGTTCCGGTAAATGTTGGTTTGCCAGCAAGTTCTGTAGAAACCCCAACCACTAGTTCCAGTATTCGGGTGTCTATTAGCTCAGTTGCTAGAGGGTTTAAAGACAAGTACTTTCCTTCTGATCCTGGGTCTATTGAAGTGGGTGTTAGTGATGATCTTTTGCATTTGAAAAATCTCTGCTTAAAGCTGAACACTTGTGTTGATGATAAAAAAACTAAGGCAAAGGGAAAAGTTAAAGCTTCTGGATTTGGTCTGGATGATAATTCTAGTAACATAGAAGAATATTTGATTGGGGTGATATCTGACATGTTAAAGGAACTTGGCAAAGGTGATGGTGTATCTACTTTTGAATTTATTGGTAGTGGTGTAGTTGAAGCCTTGCTGAGTTATTTATCTTGTGGGTATTTCGCCAAAGATCAAATGTCAGAAACCAGTCTCCCCAAGCTTCGTCAACAGGCACTTGCAAGGTTCAAGTCATTTGTTGCTATTGCACTACCTTTGAGTATTGATAATGGGGCTGTTGCTCCTATGACTGTCTTGGTTCAGAAGCTTCAAAATGCGTTGTCCTCCTTGGAGCGCTTCCCTGTAATGCTAAGTAATTCATCTCGTTCATCTAGTGGGAGTGCACGTCTCTCCTCTGGGCTAAGTGCATTATCTCAGCCCATAAAGCTGCGTCTCTGTCGAGCCCAGGGTGAAAAGTCACTTAGGGATTATTCTTCCAATGTGGTACTGATTGATCCATTAGCAAGTTTAGCAGCTATTGAGGAATTTCTGTGGACTCGGGTCCAGCGTAGTGATTCTGGTCAAAAGTCTACTGTAGCTGGTGACAATTCTGAATCTGGAACAGCTCCTGCAGGGGCAGGTGTTTCATCTCCGTGCTCTTATACTCCATCCACTACCCGACGTCATTCAACTAGATCCAGATCATCTTTTAATATAGGAGATGCACCTAGAAAAGAAACATTACAAGATAAAAGCATCGGTTCATCTAAGATCAAGGGTAAAGCTGTATTAAAGGCTACACAGGAGGAAGCACGAGGACCCCAAACGCGAAATGCTGTTCGTAGAAGAGCAGATATTGACAAAGATGCTCAAATGAAACCTATAAGTGGAGAATCAACTTCTGAGGATGAAGAATTGGATATATCTCCTGTTGAAATTGATGAGGCTTTGGTCATTGAAGATGATGATATTTCTGATGATGAGGATGAAGACCAGGAAGATGTGTTGAGGGATGATTCTCTTCCTCTCTGCTTACCTGACAAAGTACATGATGTGAAATTGGGTGACTCAGCTGAGGATAGTACTGTTCCTCCAGCAACAAGTGATAGCCAGACTAACGCAGCCTCAGGTTCTAGTAGCAAAGCTGTTACAGCCAGGGGATCTGACTCTGCTGATTTTAAAGGTGGGTATTCATCTAGCTCAAGGGGTGCAATGTCATTTGCTGCAGCTGCTATGGCTGGGCTTGGATATGCTAATAGCAGAGGTTTCAGGGGTGGCAGAGATAGGCATGGGCGTCTGTTGTTTGGTACTTCTAATGATCCTCCAAAATTAATTTTTACTGCTGCTGGGAAGCAGCTTAATAGGAATTTGACTATATACCAGGCAATTCAAAAACAGCTTGTGCTAGATGAAGATGATGATGAGAGATTGGCTGGCAGTGACTTTGTATCCAGTGATGGAAGCAGTCTGTGGGGTGATATTTATACTATCACTTATCAAAGAGCAGAAAACCAGACAGATAAGGCTTCTATTGGAGGATCAAGTTCAAATACTTCAAAACCTGCCAAATCTGGCTCTGCCTCAAATTCCAGCCCAGAAGCTAAGTTGCATCAGACTTCTGTTTTAGACAGTATATTGCAGGGAGAATTGCCGTGTGATCTGGAGAAATCTAATCCCACCTACAATATTTTGGCACTCCTGCGTGTGTTAGAGTGTTTGAACCAGCTCGCGCCTCGTTTGAGGGCTCAAATGGTTTCTGATAGCTTTGCTGAGGGAAAAATCTCTAATTTTGACCAGCTAGTTGTTACAACTGGTGCTAGGGTTGTTCCAGAGGAATTCGTTAGTGGGAAGCTTACTCCAAAATTGGCCAGGCAAATACAAGATGCGCTTGCACTATGCAGTGGTAGTCTTCCCTTATGGTGTTATCAGTTGACTAAAGCATGCCCTTTCTTGTTTCCTTTTGAGACTCGACGACAGTACTTCTATTCTACTGCATTTGGGTTATCTCGAGCATTGTATCGACTTCAGCAGCAGCAAGGTGCTGATGGTCATGGATCAACAACTGAGAGAGAGATTAGAGTTGGGAGATTACAGCGCCAAAAGGTTCGCGTCTCTCGAAACCGTGTCTTGGATTCTGCTGCAAAAGTTATGGAGATGTATTCTAGCCAAAAAGCAGTGCTTGAAGTAGAATATTTTGGCGAGGTTGGCACTGGCCTGGGCCCCACCCTTGAGTTTTATACAATCCTAAGTCATGATTTACAAAAGGTTGGACTGCAAATGTGGAGATCCCATTCTTCAAATAAACATGTAATGGAGGTTGATGGAGATGAGAAGAGAGAGAATAGTGTGGTCTCTAGGCCTGATTTGGCTGGAGATGAAGAACTTGTTCAAGCTCCTATGGGTTTGTTTCCTCGGCCCTGGCCTACAAATTCTGATGCATCAGAGGGTAGCCCATTTGCAAAAGTCATTGAGTATTTTCGGCTGCTGGGTCGTGTTATGGCAAAAGCTCTTCAAGATGGACGACTATTGGATCTGCCATTGTCTGTGGCATTCTATAAGCTTGTTCTCGGCCAAGAGCTTGATTTGTATGACATTCTGTTCATTGATGCTGAACTTGGGAAGACTTTGCAAGAGTTGAATGCCCTTGTTCGTCGGAAACATTATGTAGAATCTATTGGTGGTAGCTATACTGATACACTTTTTAACTTACATTTTCATGGTGCGCCCATTGAAGATCTTTGCTTAGATTTTACACTTCCTGGTTTTCCTGAGTACACCTTGAAACCTGGAGATGAAACAGTCAATATCAACAATTTGGAGGAGTACATATCCTTGGTGGTTGATGCAACAGTCAAGAGTGGAACCATGCGGCAAATAGAAGCATTTAGAGCAGGGTTTAATCAGGTTTTTGACATCTCATCTTTACAAATTTTTACTCCTCAAGAACTAGACTATTTGCTTTGTGGCCGCCGGGAGTTGTGGGAGGCTGAGACACTTGCTGATCATATAAAATTTGACCATGGGTACAATGCAAAGAGCCCTCCCATTGTTAATTTACTTGAAATTATGGGAGAATTCACACCGGAGCAGCAGCGTGCCTTCTGTCAATTTGTTACCGGCGCACCTAGGCTGCCACCTGGTGGGCTGGCAGTTCTAAATCCCAAACTAACGATTGTGAGGAAGCTTTCGTCAACTGCAGTTAATACTTCATCAAACGGGAACGGACCTTCAGAATCCGCGGACGATGACTTGCCTAGTGTGATGACATGCGCTAATTACCTGAAGCTTCCTCCTTACTCTACCAAGGATGTTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAAGGATCCTTTGATTTATCATGA 5667 0.4442 METRSRKRAEASSAAPSSSSITRSAKRSRLSSSSSSIPNTPTVNTRSRSVRTNTTTTTTTTNSVSLMDPTNESSGSRRDRRGKNLERDNSDKGKEKEQDVGIRDVERERVLALNMESEGVGDDDDNYSDGGVHRSLTSASTLQGLLRKLGAGLDDLLPATAMGGSASSSHLSGRLKKVLAGLRAEGEEGRQLEALSQLCFMLSIGTEESLSTFSVDSFVPVLVGLLNQESNPDVMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPPDAADFVMEAVPLLTNLLQYHDSKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISTSSSGGGQASLSTPTYTGLIRLLSTCASGSPLGPKTLLLLGISGILKDILSGSGVSSITSVSPALSRPADQIFEIVNLANELLPPLPHGTISLPVSSNLFVKGYFVKKCPSGSSGQEDTTNGNVHEISAREKLLNDQPELLQQFGMDLLPVLMQIYGASVNGPVRHRCLSVIGKLMHFSTAEMIQSLLSVTNISSFLAGVLAWKDPHVLVPALQISEILMEKLPGTFSKMFIREGVVHAVDQLILAGNSTNISIQTSAEKDSDSVSGTHSRPRHYRLRSGNSNPDANYLDDLMKSPVPVNVGLPASSVETPTTSSSIRVSISSVARGFKDKYFPSDPGSIEVGVSDDLLHLKNLCLKLNTCVDDKKTKAKGKVKASGFGLDDNSSNIEEYLIGVISDMLKELGKGDGVSTFEFIGSGVVEALLSYLSCGYFAKDQMSETSLPKLRQQALARFKSFVAIALPLSIDNGAVAPMTVLVQKLQNALSSLERFPVMLSNSSRSSSGSARLSSGLSALSQPIKLRLCRAQGEKSLRDYSSNVVLIDPLASLAAIEEFLWTRVQRSDSGQKSTVAGDNSESGTAPAGAGVSSPCSYTPSTTRRHSTRSRSSFNIGDAPRKETLQDKSIGSSKIKGKAVLKATQEEARGPQTRNAVRRRADIDKDAQMKPISGESTSEDEELDISPVEIDEALVIEDDDISDDEDEDQEDVLRDDSLPLCLPDKVHDVKLGDSAEDSTVPPATSDSQTNAASGSSSKAVTARGSDSADFKGGYSSSSRGAMSFAAAAMAGLGYANSRGFRGGRDRHGRLLFGTSNDPPKLIFTAAGKQLNRNLTIYQAIQKQLVLDEDDDERLAGSDFVSSDGSSLWGDIYTITYQRAENQTDKASIGGSSSNTSKPAKSGSASNSSPEAKLHQTSVLDSILQGELPCDLEKSNPTYNILALLRVLECLNQLAPRLRAQMVSDSFAEGKISNFDQLVVTTGARVVPEEFVSGKLTPKLARQIQDALALCSGSLPLWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSTTEREIRVGRLQRQKVRVSRNRVLDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTILSHDLQKVGLQMWRSHSSNKHVMEVDGDEKRENSVVSRPDLAGDEELVQAPMGLFPRPWPTNSDASEGSPFAKVIEYFRLLGRVMAKALQDGRLLDLPLSVAFYKLVLGQELDLYDILFIDAELGKTLQELNALVRRKHYVESIGGSYTDTLFNLHFHGAPIEDLCLDFTLPGFPEYTLKPGDETVNINNLEEYISLVVDATVKSGTMRQIEAFRAGFNQVFDISSLQIFTPQELDYLLCGRRELWEAETLADHIKFDHGYNAKSPPIVNLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSTAVNTSSNGNGPSESADDDLPSVMTCANYLKLPPYSTKDVMYKKLLYAISEGQGSFDLS* 1889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1230 1888 MobiDBLite consensus disorder prediction 956 1107 - -
Pvu9g1230 1888 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 48 1888 IPR045322 GO:0006511|GO:0061630
Pvu9g1230 1888 SUPERFAMILY ARM repeat 174 652 IPR016024 -
Pvu9g1230 1888 Pfam HECT-domain (ubiquitin-transferase) 1514 1888 IPR000569 GO:0004842
Pvu9g1230 1888 ProSiteProfiles HECT domain profile. 1588 1888 IPR000569 GO:0004842
Pvu9g1230 1888 MobiDBLite consensus disorder prediction 652 685 - -
Pvu9g1230 1888 MobiDBLite consensus disorder prediction 1120 1160 - -
Pvu9g1230 1888 MobiDBLite consensus disorder prediction 1040 1057 - -
Pvu9g1230 1888 MobiDBLite consensus disorder prediction 10 72 - -
Pvu9g1230 1888 CDD HECTc 1465 1883 IPR000569 GO:0004842
Pvu9g1230 1888 Gene3D - 179 656 IPR011989 -
Pvu9g1230 1888 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 48 1888 - -
Pvu9g1230 1888 MobiDBLite consensus disorder prediction 1066 1101 - -
Pvu9g1230 1888 SMART hect_3 1476 1888 IPR000569 GO:0004842
Pvu9g1230 1888 SMART arm_5 206 247 IPR000225 GO:0005515
Pvu9g1230 1888 SMART arm_5 289 329 IPR000225 GO:0005515
Pvu9g1230 1888 SMART arm_5 332 370 IPR000225 GO:0005515
Pvu9g1230 1888 MobiDBLite consensus disorder prediction 956 1007 - -
Pvu9g1230 1888 MobiDBLite consensus disorder prediction 73 108 - -
Pvu9g1230 1888 MobiDBLite consensus disorder prediction 1271 1299 - -
Pvu9g1230 1888 Gene3D Hect, E3 ligase catalytic domain 1759 1886 - -
Pvu9g1230 1888 MobiDBLite consensus disorder prediction 1 108 - -
Pvu9g1230 1888 SUPERFAMILY Hect, E3 ligase catalytic domain 1458 1881 IPR035983 GO:0004842
Pvu9g1230 1888 Gene3D Hect, E3 ligase catalytic domains 1406 1649 - -
Pvu9g1230 1888 MobiDBLite consensus disorder prediction 1126 1151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1230 Pvu-Chr9 17765694 17776046 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1230 K10590 - gmx:100791450 3057.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1230 9 17765694 17776046 Pvu9g1230 9 17765694 17776046 ECH