Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1205 ATGAGGAAAATGATTTTGTTAATAGGGGTACCGTTATGTGTTTCCTTGATTGTGAACTGGTTTATTGAGTTGCAGTTTAGAGTAAAAAAAGTAGTGTCATTCATTGTAAATTTTGTAACTCTTCTGTTTGTTTTCTGTGTAAGAAATATAATTTCTCTGATTGTGTGTGGACAGGCTGTAATAGCTACTGCTGCATCTGAAGCCCTTGCTCTTGCTAAAGAAGCTGTGAAGGTTGCAAAGGATGTTGCTTTACTAGTAAAAAAGAAGCCCCAAGCAGAAGCAGAGTATAGATCCCATGTTTCTTTCAAATCTGATGATTTGTTTCTCAAATGGTTTCAACATATGGATGTGGTAGGTTGTGTAGCAGGGGAATCCATGGGTGCTGGAGCAGAAATGATGGAAGGTGTTGACCTAAGCCCCAGCGAAGAGGAATCTTATGTAGAACCTTCCCATGAGGAACTTGAGAGCCTGCAGGAACAGCTTTCCAAATTCCAACAAGTCAGAGCAGCAGAGAAGGCTTCCACAAATGTTGCATCTTTTAAGCCTGGCTCCTCCAGAAGAAGAAAGCGTGTTTCCATGCAAGAAGTAGATTATTCAGATCCACTTCGTTACTTAAGAACAACAACCACTACTTCTAGGCTTCTCACCTCAACTGAAGAAATCAAGTTGTCAGAAGGAATACAGGACCTTCTAAAGCTTGAAAGACTCCAGGACGATCTTGTAGAAAGATGTGGTGGTCTGCGCACATTTGCTCAATGGGCTGCAGTGGCAGGGGTAGACCAGAAGACACTTAGGAAATGTTTAAGTCATGGTAGATTTTGCAAAGACAAAATGATTAAAAACAATATAAGATTTGTCATATCAATTGCAAAGAGTTATCAGGGATCTGGGATGAATTTGCAAGATCTTGTCCAGCTGATGTCGAGGCCTTGTAAAAGGCTCAAATTCTCCACCTATGCTCATTGGTGGATTAAACAGGCTGTTCGGAAATCACTTTCTGATCAGTCAAGAACTATTCGCTTGCCATTCTACATGGTGGAGGCGACTTACAGAGTGAAGGAGGCAAGAAAACAACTGTACAGTGAAAATGGAAGACAGCCTGATGATGAAGAAGTTGCTGAAGCAGCTGGGTTGTCTATGAAGAGGCTTACTGCTGTATTTTTTACTCCAAAAGCTCCCAGATATCTGGAACAGAAGATTGGAATCAACCAAAATCTTAAACCTTCAGAAATAATTTCTGATCCTGATGCCGAAACAACTGAAGAACAGCTCCTTAAGCAATTCATGAAGAAGGACCTGCAAGAGGCACTGGACAGTCTTACTTCAAGGGAGAGACAGGTGGTAAGATGGAGATTTGGCATGGATGATGGAAGGACGAAGACCCTGCAAGAGATCGGGGAGATGATGGGTGTGAGCAGGGAGAGAATTAGGCTAATTGAGTCAAGTGCTTTTAAGAAGCTTAAGAACAAGAAGAGAACCAAACATTTCCAGCAGTATTTGGTTCCATAA 1509 0.4155 MRKMILLIGVPLCVSLIVNWFIELQFRVKKVVSFIVNFVTLLFVFCVRNIISLIVCGQAVIATAASEALALAKEAVKVAKDVALLVKKKPQAEAEYRSHVSFKSDDLFLKWFQHMDVVGCVAGESMGAGAEMMEGVDLSPSEEESYVEPSHEELESLQEQLSKFQQVRAAEKASTNVASFKPGSSRRRKRVSMQEVDYSDPLRYLRTTTTTSRLLTSTEEIKLSEGIQDLLKLERLQDDLVERCGGLRTFAQWAAVAGVDQKTLRKCLSHGRFCKDKMIKNNIRFVISIAKSYQGSGMNLQDLVQLMSRPCKRLKFSTYAHWWIKQAVRKSLSDQSRTIRLPFYMVEATYRVKEARKQLYSENGRQPDDEEVAEAAGLSMKRLTAVFFTPKAPRYLEQKIGINQNLKPSEIISDPDAETTEEQLLKQFMKKDLQEALDSLTSRERQVVRWRFGMDDGRTKTLQEIGEMMGVSRERIRLIESSAFKKLKNKKRTKHFQQYLVP* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1205 502 Coils Coil 154 174 - -
Pvu9g1205 502 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 58 501 - -
Pvu9g1205 502 PRINTS Major sigma-70 factor signature 316 324 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pvu9g1205 502 PRINTS Major sigma-70 factor signature 440 452 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pvu9g1205 502 PRINTS Major sigma-70 factor signature 461 476 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pvu9g1205 502 PRINTS Major sigma-70 factor signature 476 487 IPR000943 GO:0003700|GO:0006352|GO:0006355
Pvu9g1205 502 Gene3D - 422 502 IPR036388 -
Pvu9g1205 502 Gene3D RNA Polymerase Primary Sigma Factor 131 340 - -
Pvu9g1205 502 Pfam Sigma-70, region 4 436 488 IPR007630 GO:0003700|GO:0006352|GO:0006355
Pvu9g1205 502 CDD Sigma70_r4 430 483 - -
Pvu9g1205 502 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 336 385 IPR013324 -
Pvu9g1205 502 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 199 338 IPR013325 GO:0003700|GO:0006352|GO:0006355
Pvu9g1205 502 Pfam Sigma-70 region 3 347 423 IPR007624 GO:0003700|GO:0006352|GO:0006355
Pvu9g1205 502 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 276 490 IPR014284 GO:0003700|GO:0006352|GO:0006355
Pvu9g1205 502 PANTHER RNA POLYMERASE SIGMA FACTOR SIGB 58 501 - -
Pvu9g1205 502 Gene3D - 341 418 IPR036388 -
Pvu9g1205 502 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 400 498 IPR013324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1205 Pvu-Chr9 17531173 17535831 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1205 - - pvu:PHAVU_009G117300g 907.131