Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1201 ATGGAAGGGTTGGCGCTTCTTCCATTTGCAAAGCTTCCAAAGCTTGCCGCCATTCCCAGTTCTAACAATTATAATATTAATAATACCAATGGATTTCTCTCTCACAGACCGCACCGTACACGCTGCTTTCGTTTTCGCACTTCATTCTTTTCCAAGCCACAGGACCTTCCTCTTCCCCAACACCAACAACAGCAACAGCAGCAGCAACAAGTCACAGTGAATCCCAATTGTGTGAGTGGGGATTCCATACGTCAGAGATTTCTTCATTTTTATGCTTCCCGCGGTCACAGCCTCCTTCCCAGCGCTTCTCTCGTCCCCGATGATCCCACTGTTCTACTCACCATCGCAGGGATGCTCCAATTCAAGCCCATCTTCCTCGGCAAGGTTCCAAGACAAGTACCTTGTGCTGCTACTGCACAGAGATGCATCCGCACTAATGATATCGACAATGTTGGCCTAACTTCCAGACATCATACCTTCTTTGAAATGCTTGGAAACTTCAGCTTTGGTGATTACTTCAAAAAACAAGCTATTCTATGGGCGTGGGAGCTTTCCACCTCAGAGTTTGGTTTGCCACCGGACCGATTATGGATTAGTGTTTATGAAGATGATGATGAAGCTTTTCAGCTATGGTCTGACGAGATTGGTGTCCCAGTTGAACGTATAAAAAGGTTGGGAGAAGAAGATAACTTCTGGACCAGTGGAGTGACAGGTCCCTGTGGTCCTTGCTCAGAAATTTATTATGATTTTCATCCTGAGAGGGGATATGCAGATGCTGATCTCAATGATGATACAAGGTTTATAGAGTTCTACAACTTAGTCTTCATGCAATACAACAAAAAGGATGATGGTTCTCTTGAACCTCTAAAACAGAAGAACATAGACACTGGCCTTGGACTGGAGCGTATGGCTCGTATTCTACAACAGGTTCCAAACAATTATGAAACTGACTTGATTTTCCCCATCATAGAGGAGGCCTCTAAGTTAGCAAATGTTTCTTATGGTATTGCTGATGACCAGACAAAGAGGAATCTCAAAATTATAGGAGATCACATGCGTGCAATTGTATTTCTCATCTCTGATGGAGTTGTTCCATCAAATGTTGGGAGAGGTTATGTGGTTCGACGGCTTATTAGAAGGGTTGCTCGTACAGGAAGGTTGCTTGGTATAAAGGGTGATAGTAGGGGAGACCTTGAAGGAGCGTTTTTACCAATTATTGCTGAGAAGGTTGTGGAATTAAGTACACACATTGAGGCTGATGTGAAGAACAAAGCACCACGTATATTTGAGGAGCTGAAGAGAGAAGAGCTTCGGTTTGTGCAGACACTGGAAAGAGGAGAAAAGTTGCTTGAGGAGAAACTTGCTGATGCCTTATCAAGTGCAGAAAGAAATGGAACTGTTCCTTGCATGGCTGGCGAAGATGTGTTTCTGTTGTATGATACTTATGGATATCCAATGGAAATAACAAAAGAAGTGGCTGAAGAACGTGGTGTGAGCATTGATATGGATGGTTTTGATATTGAGATGGAGAAGCAAAGGCGTCAATCTCAAGCTGCACATAATACTGTCAAACTTGCCATTGAAAATGGGGAAAATATTGCAGAGAATGTACCTGACACTGAATTTATTGGATATGACAGACTTCATTGTAAAGCAATGATAGAAAGCCTCATGGTGAATGGAAATCCAGCTGTACAGGTCAGTGAAGGGAGTAATGTGGAAGTTTTACTGAATAAGACTCCATTTTATGCTGAATCAGGGGGTCAAATTGGCGATCATGGTTTTCTATATATTTCAGAGGGTGATAATCAACCAAAAGCTGTTGTGGAGATAATAGATGTTCAGAAATCATTAGGCAACATATTTGTGCACAAGGGTACAGTCCAAAAGGGTGTTGTAGAGGTTGGCAAAGAAGTGGAAGCAGCAGTTGATATGAAGCTGAGGCAGCGAGCTAAGGTCCATCATACTGCTACTCATTTACTACAAACTGCCCTTAAAAAAGTTATTGGTCAGGAGACCTCACAAGCTGGTTCACTGGTGGCATTTGATCGTCTCAGGTTTGATTTCAACTTCCACCGACCACTTCATGATACTGAACTTGCTGAAATTGAAGTGCTAATCAATGGATGGATTGAGGATGCAACACTACTTCAAACCAAAGTGATGCCTCTCACTGATGCAAAAAGTGCTGGGGCTATTGCAATGTTTGGAGAAAAATATGGAGAAGAGGTACGTGTCGTAGAGATTCCTGGTGTATCAATGGAACTATGTGGTGGGACTCATGTCAATAATACTTCTGAAATTCGCGGTTTTAAAATAATATCAGAACAGGGTATTGCATCTGGAATCAGGCGTATTGAAGCTGTAGCTGGTGAAGCCTTCATTGAATATATCAATGCCCGAGACTTTTATCTAAAGCAGCTATGTTCCACTCTCAAAGCTAAGCCAGAAGAAGTGACAACAAGGGTAGAAAACCTTTTAGAGGAGTTACGGGCAGTGAGAAATGAAAATTCTGCAGTACGTGCAAAAGCAGCAGTCTACAAAGCTTCCGTTATTGCGAGCAAAACATTGTTGGTGGGGAATTCAAAACAGTACAGGGTACTAGTTGAGTGCTTCGATGATGTTGATGCTGATTCACTTAAAAGTGCCGCAGAATATTTACTGGAAACACTAACAGATCCAGCAGCCGTGGTACTGGGCTCATGTCCTGGTGAAGGGAAGGTTAGCCTAGTTGCTGCTTTTTCACCAGGGGTGGTTGATCAGGGGATTCAGGCAGGTAAGTTTATTGGCCAAATAGCAAAATTATGTGGCGGTGGTGGAGGTGGAAGGCCCAATTTTGCTCAGGCAGGTGGGAGGAAGCCTGAAAATTTGTCAAGTGCCCTCGACAAGGCTCGGTCAGAACTCATGGCTACTCTATGTGAAAAAGGGAATTGA 2934 0.4312 MEGLALLPFAKLPKLAAIPSSNNYNINNTNGFLSHRPHRTRCFRFRTSFFSKPQDLPLPQHQQQQQQQQQVTVNPNCVSGDSIRQRFLHFYASRGHSLLPSASLVPDDPTVLLTIAGMLQFKPIFLGKVPRQVPCAATAQRCIRTNDIDNVGLTSRHHTFFEMLGNFSFGDYFKKQAILWAWELSTSEFGLPPDRLWISVYEDDDEAFQLWSDEIGVPVERIKRLGEEDNFWTSGVTGPCGPCSEIYYDFHPERGYADADLNDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERMARILQQVPNNYETDLIFPIIEEASKLANVSYGIADDQTKRNLKIIGDHMRAIVFLISDGVVPSNVGRGYVVRRLIRRVARTGRLLGIKGDSRGDLEGAFLPIIAEKVVELSTHIEADVKNKAPRIFEELKREELRFVQTLERGEKLLEEKLADALSSAERNGTVPCMAGEDVFLLYDTYGYPMEITKEVAEERGVSIDMDGFDIEMEKQRRQSQAAHNTVKLAIENGENIAENVPDTEFIGYDRLHCKAMIESLMVNGNPAVQVSEGSNVEVLLNKTPFYAESGGQIGDHGFLYISEGDNQPKAVVEIIDVQKSLGNIFVHKGTVQKGVVEVGKEVEAAVDMKLRQRAKVHHTATHLLQTALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLHDTELAEIEVLINGWIEDATLLQTKVMPLTDAKSAGAIAMFGEKYGEEVRVVEIPGVSMELCGGTHVNNTSEIRGFKIISEQGIASGIRRIEAVAGEAFIEYINARDFYLKQLCSTLKAKPEEVTTRVENLLEELRAVRNENSAVRAKAAVYKASVIASKTLLVGNSKQYRVLVECFDDVDADSLKSAAEYLLETLTDPAAVVLGSCPGEGKVSLVAAFSPGVVDQGIQAGKFIGQIAKLCGGGGGGRPNFAQAGGRKPENLSSALDKARSELMATLCEKGN* 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1201 977 Pfam DHHA1 domain 823 966 IPR003156 GO:0003676
Pvu9g1201 977 Gene3D - 715 768 - -
Pvu9g1201 977 PRINTS Alanyl-tRNA synthetase signature 146 157 IPR002318 GO:0000166|GO:0005737
Pvu9g1201 977 PRINTS Alanyl-tRNA synthetase signature 268 279 IPR002318 GO:0000166|GO:0005737
Pvu9g1201 977 PRINTS Alanyl-tRNA synthetase signature 295 308 IPR002318 GO:0000166|GO:0005737
Pvu9g1201 977 PRINTS Alanyl-tRNA synthetase signature 346 362 IPR002318 GO:0000166|GO:0005737
Pvu9g1201 977 PRINTS Alanyl-tRNA synthetase signature 370 383 IPR002318 GO:0000166|GO:0005737
Pvu9g1201 977 SUPERFAMILY Class II aaRS and biotin synthetases 80 314 IPR045864 -
Pvu9g1201 977 Gene3D Bira Bifunctional Protein; Domain 2 78 311 IPR045864 -
Pvu9g1201 977 Coils Coil 823 843 - -
Pvu9g1201 977 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 315 524 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Pvu9g1201 977 Hamap Probable alanine--tRNA ligase, chloroplastic. 67 974 IPR027522 GO:0009507
Pvu9g1201 977 Gene3D - 791 852 - -
Pvu9g1201 977 Gene3D - 860 968 - -
Pvu9g1201 977 SUPERFAMILY ThrRS/AlaRS common domain 643 802 IPR018163 GO:0000166
Pvu9g1201 977 PANTHER ALANINE--TRNA LIGASE, MITOCHONDRIAL 79 968 - -
Pvu9g1201 977 Gene3D - 564 643 - -
Pvu9g1201 977 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 78 800 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Pvu9g1201 977 TIGRFAM alaS: alanine--tRNA ligase 83 951 IPR002318 GO:0000166|GO:0005737
Pvu9g1201 977 SMART tRNA_SAD_4 744 787 IPR012947 GO:0004812|GO:0005524|GO:0043039
Pvu9g1201 977 Pfam tRNA synthetases class II (A) 83 646 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Pvu9g1201 977 Gene3D - 654 789 - -
Pvu9g1201 977 CDD AlaRS_core 81 310 - -
Pvu9g1201 977 PANTHER ALANYL-TRNA SYNTHETASE 79 968 - -
Pvu9g1201 977 Hamap Alanine--tRNA ligase [alaS]. 79 972 IPR023033 GO:0004813
Pvu9g1201 977 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 744 787 IPR012947 GO:0004812|GO:0005524|GO:0043039
Pvu9g1201 977 SUPERFAMILY Translation proteins 538 643 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1201 Pvu-Chr9 17501462 17507558 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1201 K01872 - gmx:100817906 1689.09