Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1198 ATGAAGAAGAATAGGATGATGATTATGATATGCAGTGTAGGAGTGGTGTGGATGCTGTTAGTTGGAGGAAGCTACGGAGAGCAGTGTGGAAGGCAAGCAGGAGGTGCACTCTGCCCAGGGGGCAACTGTTGCAGCCAGTTCGGGTGGTGCGGCTCCACCACTGACTACTGCGGCAAGGATTGCCAGAGCCAGTGCGGGGGACCGTCTCCTGCTCCTACTGATCTCAGCGCCCTCATATCCAGGTCCACCTTCGACCAGGTGCTCAAACATCGCAACGACGGAGCATGCCCAGCCAAAGGCTTCTACACCTACGATGCCTTCATCGCCGCCGCCAAGGCTTACCCCAGCTTCGGAAACACCGGAGACACGGCCACTCGCAAGAGGGAGATTGCGGCCTTCTTGGGGCAAACGTCTCACGAAACAACCGGGGGATGGGCCACTGCGCCCGACGGACCATACGCATGGGGATACTGCTTCGTGAGGGAGCGGAACCCCAGTGCGTACTGCTCCGCCACTCCCCAGTTCCCCTGCGCCCCTGGGCAGCAGTACTACGGCAGGGGTCCCATCCAGATATCCTGGAACTACAACTATGGTCAGTGCGGAAGGGCCATTGGGGTTGACTTGCTCAACAAACCTGATCTAGTCGCCACTGACTCTGTCATCTCCTTCAAGTCCGCCCTCTGGTTCTGGATGACCGCACAGTCCCCCAAACCTTCCTCCCACGACGTCATCACCTCTCGATGGACCCCCTCCTCTGCCGACGTCGCCGCCCGCCGGCTTCCCGGCTACGGCACTGTGACGAACATCATCAACGGAGGCCTGGAGTGCGGGCGAGGACAGGACAGCAGGGTTCAAGACCGCATCGGATTCTTCAAGAGATACTGTGATCTGCTTGGAGTTGGTTATGGCAACAACCTTGACTGCTACTCTCAGACTCCATTTGGAAATTCACTCTTCCTCTCTGACCTTGTCACCTCTCAGTGA 984 0.5813 MKKNRMMIMICSVGVVWMLLVGGSYGEQCGRQAGGALCPGGNCCSQFGWCGSTTDYCGKDCQSQCGGPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERNPSAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQCGRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLFLSDLVTSQ* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1198 327 Pfam Chitin recognition protein 28 65 IPR001002 GO:0008061
Pvu9g1198 327 Gene3D - 26 67 IPR036861 GO:0008061
Pvu9g1198 327 ProSiteProfiles Chitin-binding type-1 domain profile. 26 67 IPR001002 GO:0008061
Pvu9g1198 327 PANTHER CHITINASE (CLASS IB) / HEVEIN 10 314 - -
Pvu9g1198 327 ProSitePatterns Chitinases family 19 signature 2. 221 231 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pvu9g1198 327 ProSitePatterns Chitin recognition or binding domain signature. 38 57 IPR018371 GO:0008061
Pvu9g1198 327 SMART ChitinBD_3 28 65 IPR001002 GO:0008061
Pvu9g1198 327 CDD ChtBD1_GH19_hevein 27 66 - -
Pvu9g1198 327 CDD chitinase_GH19 79 308 - -
Pvu9g1198 327 SUPERFAMILY Lysozyme-like 75 315 IPR023346 -
Pvu9g1198 327 Gene3D - 78 309 - -
Pvu9g1198 327 PANTHER CHITINASE-RELATED 10 314 - -
Pvu9g1198 327 Pfam Chitinase class I 78 308 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pvu9g1198 327 ProSitePatterns Chitinases family 19 signature 1. 96 118 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pvu9g1198 327 Gene3D Endochitinase, domain 2 161 217 - -
Pvu9g1198 327 SUPERFAMILY Plant lectins/antimicrobial peptides 28 70 IPR036861 GO:0008061
Pvu9g1198 327 PIRSF Endochitinase 1 315 IPR016283 GO:0004568|GO:0005975
Pvu9g1198 327 PRINTS Chitin-binding domain signature 36 44 IPR001002 GO:0008061
Pvu9g1198 327 PRINTS Chitin-binding domain signature 44 51 IPR001002 GO:0008061
Pvu9g1198 327 PRINTS Chitin-binding domain signature 51 58 IPR001002 GO:0008061
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1198 Pvu-Chr9 17449427 17450654 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1198 27 323 Glycoside Hydrolase AT3G12500 69.205 5.32e-154 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1198 K20547 - egr:104419011 515.383