Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1196 ATGCTGTTGTTGGTTGGAGGAAGCTACGGAGAGCAGTGTGGAAGGCAAGCAGGAGGTGCACTCTGCCCAGGGGGCAACTGTTGCAGCCAGTTCGGGTGGTGCGGCTCCACCACCGACTACTGCGGCCCGGGTTGCCAGAGCCAGTGCGGGGGACCGTCTCCTGCTCCTACTGATCTCAGCGCCCTCATATCCAGGTCCACCTTCGACCAGATGCTCAAACATCGCAACGACGGAGCCTGCCCAGCCAAAGGCTTCTACACCTACGATGCCTTCATCGCCGCCGCCAAGGCTTACCCCAGCTTCGGAAACACCGGAGACACGGCCACTCGCAAGAGGGAGATTGCGGCCTTCTTGGGGCAAAC 362 0.616 MLLLVGGSYGEQCGRQAGGALCPGGNCCSQFGWCGSTTDYCGPGCQSQCGGPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQ 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1196 120 ProSiteProfiles Chitin-binding type-1 domain profile. 10 51 IPR001002 GO:0008061
Pvu9g1196 120 PRINTS Chitin-binding domain signature 20 28 IPR001002 GO:0008061
Pvu9g1196 120 PRINTS Chitin-binding domain signature 28 35 IPR001002 GO:0008061
Pvu9g1196 120 PRINTS Chitin-binding domain signature 35 42 IPR001002 GO:0008061
Pvu9g1196 120 SMART ChitinBD_3 12 49 IPR001002 GO:0008061
Pvu9g1196 120 Gene3D - 10 48 IPR036861 GO:0008061
Pvu9g1196 120 Pfam Chitinase class I 62 120 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pvu9g1196 120 ProSitePatterns Chitinases family 19 signature 1. 80 102 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pvu9g1196 120 PANTHER CHITINASE-RELATED 3 120 - -
Pvu9g1196 120 CDD ChtBD1_GH19_hevein 11 50 - -
Pvu9g1196 120 Pfam Chitin recognition protein 12 49 IPR001002 GO:0008061
Pvu9g1196 120 SUPERFAMILY Plant lectins/antimicrobial peptides 12 54 IPR036861 GO:0008061
Pvu9g1196 120 SUPERFAMILY Lysozyme-like 59 120 IPR023346 -
Pvu9g1196 120 PANTHER BASIC ENDOCHITINASE B 3 120 - -
Pvu9g1196 120 ProSitePatterns Chitin recognition or binding domain signature. 22 41 IPR018371 GO:0008061
Pvu9g1196 120 Gene3D - 49 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1196 Pvu-Chr9 17433306 17433667 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1196 11 120 Glycoside Hydrolase AT3G12500 70.175 2.54e-49 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1196 K20547 - pvu:PHAVU_009G1165001 248.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1196 9 17433306 17433667 Pvu9g1196 9 17433306 17433667 ECH