Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1172 ATGCTTTTATATGGCTGTCCTCCCAATGTTGTTACTTTACTTTCCTTAATTGATGGCTATTGCCGAATTGGATGGGTGGATCATGGCTTGGACTTATTGCATGAAATGAAAGCACGTCATGTTCCGGCAAATTTGTATACTTTCTCTGTTCTTATCAGTGCTTTGTGCAAGAGCAATAGACTGCAAGAAGCACATAATCTTTTGAGACTATTGAAGCAGAGTGACATTGTTCCACAGTCTTTTGTCTACAATCCTGTCATTGATGGATATTGCAAATCTGGGAACATTGATGAGGCTAATGCACTTGTGGCAGAAATGGAAGAGAAAGGCAAGCCTGATAAGTTGACATTTACCATTCTTATTATTGGGCATTGTATGAAAGGAAGAACACCTGAAGCAATTGGTATCTTCTACAGGATGCTGGAAGCTGGTTGTACTCCAGATGACATCACAATTAGAACGTTGAGTTCCTGTCTTTTGAAGGCTGGGATGCCTAGTGAGGCTTCCCACATTAAGGAAACTATATTTGAGAATCAGAGTACATTACTGAAAAAATCTTATCATGAAAGTATAAATTCAGATAAGTCAATTCCTGTTCATTAA 603 0.3847 MLLYGCPPNVVTLLSLIDGYCRIGWVDHGLDLLHEMKARHVPANLYTFSVLISALCKSNRLQEAHNLLRLLKQSDIVPQSFVYNPVIDGYCKSGNIDEANALVAEMEEKGKPDKLTFTILIIGHCMKGRTPEAIGIFYRMLEAGCTPDDITIRTLSSCLLKAGMPSEASHIKETIFENQSTLLKKSYHESINSDKSIPVH* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1172 200 Pfam PPR repeat family 78 125 IPR002885 -
Pvu9g1172 200 Pfam PPR repeat family 8 57 IPR002885 -
Pvu9g1172 200 TIGRFAM PPR: pentatricopeptide repeat domain 116 148 IPR002885 -
Pvu9g1172 200 TIGRFAM PPR: pentatricopeptide repeat domain 12 44 IPR002885 -
Pvu9g1172 200 TIGRFAM PPR: pentatricopeptide repeat domain 82 110 IPR002885 -
Pvu9g1172 200 TIGRFAM PPR: pentatricopeptide repeat domain 46 78 IPR002885 -
Pvu9g1172 200 Gene3D Tetratricopeptide repeat domain 108 177 IPR011990 GO:0005515
Pvu9g1172 200 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 200 - -
Pvu9g1172 200 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Pvu9g1172 200 Gene3D Tetratricopeptide repeat domain 1 107 IPR011990 GO:0005515
Pvu9g1172 200 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Pvu9g1172 200 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Pvu9g1172 200 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 1 200 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1172 1 178 Glycosyltransferase AT1G05670 29.050 6.70e-18 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1172 - - pvu:PHAVU_009G114200g 408.683