Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu9g1073 ATGAACGAGGGTCGACTATTGAGTACGATTCTGAACAAGTGTTCGAAGCGTCGTTTGATTGATCAGGGAAAGCAAGCACATGGGGTTGTGGAGAAGCTAGGGTTTAGGCGTGATTTGGTTTTGAACAATGATCTTATACATATGTACTCAAAATGTGGTACAGTGGATTTGGCTTGTTTGGTGTTTGTTCGGATGCCTCAGAGAAATGTAGTGTCTTGGACGTCTCTAATATGTGGATATCTGCAAAATGGTGATGCCAAAGCCTCTTTGGTTTTGTTTTCTAAAATGGGTCGTTCAGATATTAGACCAAATGAGTTCACACTATCCACGAGTCTAAAAGCATCTGGGAATTTGGGAATCGCTCAGATTGGAATGCAGATACATGGCTTTTGTGCAAAATCTAATTTTGATTGGGTACCTGTTGTGGGCAATTCTACGATGGACATGTACTGCAAGTGTGGTATGGTTAGGGAGGCAGCGCAAGTGTTCAACACTTTGCCAGAGAGAAATGTTATAAGTTGGAATGTAATGATTGCTGGGTACTGCAACAATGGAAATGGTGGAGAGGCTTTGAATTTATTTAGGGAAATGCAAGCGACGGGGGAAGTTCCAGATGGATATACATATTCAAGCTCGTTGAAGGCGTGTAATTGTGCTGGTGCAGTGAGAGAAGGAATGCAAATCCATGCTGCGTTAATCAGACATGGATATCCTTACTTGGCTGAATCAGCTGTTGCAGGTGCTTTGGTTGATCTGTATGTCAAATGCAGGCGCATGGCTGAAGCTAGGAGGGTGTTCGATCGAATTGAAGAGAAGAGTGTGAGGTCTTGGAGCACACTAATTCTTGGTTATGCACATGAAGATAGTTTGACAGAAGCCATGGACTTGTTTAGGGAGTTGAGAGAGAGCAGACTTAGAATGGATGGGTTTGTACTCTCGAGTCTCATAGGGGTATTTGCTGATTTTGCTCTTGCAGAGCAAGGGAAGCAAATGCATGCTTATGCAATAAAGGTGCCGTATGGTTTATTGGAAATGTCTGTGGCTAATTCAGTTCTGGATATGTACATGAAATGTGGACTAATAGATGAGGCAGATGCACTTTTCAGAGAGATGCTAGCAAGAAATGTGGTTTCATGGACCGTTATGATCACGGGTTATGGGAAACACGGTATTGGGAATAAGGCAGTTGAACTGTTTAACCAAATGCAATTGAACGGAATCGAACCTGATGGTGTAACTTATTTGGCTGTGCTCTCAGCTTGCAAGCATTATGCTTGCATGGTTGATCTCCTTGGACGACGTGGACTCTTGAAGGATGCAAAGGATCTCATTGAGAAAATGCCCCTAAAGCCAAATGTGGGCATATGGCAAACATTACTTAGTGTTTGTAGAATGCATGCAGATGTGGAAATGGGGAAACAAGTGGGAGAAATACTTTTGAGATTGGATGGTAATAATCCAGCCAACTATGTCATTATGTCAAACATGTATGCTGATGGAGGGTATTGGAAAGAGAGTGAGAAACTAAGAGAAACCGCGAAGAGAAAGGGATTGAAGAAAGAAGCAGGACGTAGTTGGGTAGAGATAGACAGAGAAATTCACATTTTTTACAATGGAGATTGCATGCATCCTCTCATAGGGGAAATTCATGAAGTGTTGAAAGAAGTGGAGAAGAGGGTGAAGGATGAAATGGGGTATGCTCATGGTGTAAATTTTGCCTTGCATGATGTTGAAGAGGAGTCAAAGGTGGAAAGTTTGAGGGTTCATAGCGAGAAATTGGCTATTGGGTTGGTTTTGGTTAGACGTGGACTAAAAGGAGAAAGTGTGATTAGAATTTTCAAGAACTTGAGGGTTTGTGGGGATTGTCATGCATTCATCAAGGGTTTGTCAAAGGTTTTGAAGATTGTTTTTGTCGTGAGAGATGCAAATAGGTTTCACAGATTTGAGAACGGCTTGTGTTCATGTGGAGATTACTGGTGA 1980 0.4212 MNEGRLLSTILNKCSKRRLIDQGKQAHGVVEKLGFRRDLVLNNDLIHMYSKCGTVDLACLVFVRMPQRNVVSWTSLICGYLQNGDAKASLVLFSKMGRSDIRPNEFTLSTSLKASGNLGIAQIGMQIHGFCAKSNFDWVPVVGNSTMDMYCKCGMVREAAQVFNTLPERNVISWNVMIAGYCNNGNGGEALNLFREMQATGEVPDGYTYSSSLKACNCAGAVREGMQIHAALIRHGYPYLAESAVAGALVDLYVKCRRMAEARRVFDRIEEKSVRSWSTLILGYAHEDSLTEAMDLFRELRESRLRMDGFVLSSLIGVFADFALAEQGKQMHAYAIKVPYGLLEMSVANSVLDMYMKCGLIDEADALFREMLARNVVSWTVMITGYGKHGIGNKAVELFNQMQLNGIEPDGVTYLAVLSACKHYACMVDLLGRRGLLKDAKDLIEKMPLKPNVGIWQTLLSVCRMHADVEMGKQVGEILLRLDGNNPANYVIMSNMYADGGYWKESEKLRETAKRKGLKKEAGRSWVEIDREIHIFYNGDCMHPLIGEIHEVLKEVEKRVKDEMGYAHGVNFALHDVEEESKVESLRVHSEKLAIGLVLVRRGLKGESVIRIFKNLRVCGDCHAFIKGLSKVLKIVFVVRDANRFHRFENGLCSCGDYW* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu9g1073 659 Pfam PPR repeat family 68 114 IPR002885 -
Pvu9g1073 659 Pfam PPR repeat family 374 421 IPR002885 -
Pvu9g1073 659 Pfam PPR repeat family 169 216 IPR002885 -
Pvu9g1073 659 TIGRFAM PPR: pentatricopeptide repeat domain 172 205 IPR002885 -
Pvu9g1073 659 TIGRFAM PPR: pentatricopeptide repeat domain 377 410 IPR002885 -
Pvu9g1073 659 TIGRFAM PPR: pentatricopeptide repeat domain 71 105 IPR002885 -
Pvu9g1073 659 TIGRFAM PPR: pentatricopeptide repeat domain 276 308 IPR002885 -
Pvu9g1073 659 TIGRFAM PPR: pentatricopeptide repeat domain 349 377 IPR002885 -
Pvu9g1073 659 Pfam E motif 466 528 IPR046848 -
Pvu9g1073 659 Pfam DYW family of nucleic acid deaminases 565 659 IPR032867 GO:0008270
Pvu9g1073 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Pvu9g1073 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 69 103 IPR002885 -
Pvu9g1073 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Pvu9g1073 659 Gene3D Tetratricopeptide repeat domain 125 235 IPR011990 GO:0005515
Pvu9g1073 659 Gene3D Tetratricopeptide repeat domain 3 121 IPR011990 GO:0005515
Pvu9g1073 659 Gene3D Tetratricopeptide repeat domain 329 422 IPR011990 GO:0005515
Pvu9g1073 659 PANTHER - 423 617 - -
Pvu9g1073 659 PANTHER - 1 423 - -
Pvu9g1073 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 374 IPR002885 -
Pvu9g1073 659 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 1 423 - -
Pvu9g1073 659 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 423 617 - -
Pvu9g1073 659 Pfam PPR repeat 424 448 IPR002885 -
Pvu9g1073 659 Pfam PPR repeat 248 273 IPR002885 -
Pvu9g1073 659 Pfam PPR repeat 276 304 IPR002885 -
Pvu9g1073 659 Gene3D Tetratricopeptide repeat domain 423 541 IPR011990 GO:0005515
Pvu9g1073 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu9g1073 Pvu-Chr9 15760955 15763074 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu9g1073 8 659 Glycoside Hydrolase AT3G49170 36.812 6.28e-143 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu9g1073 - - gmx:100806657 1137.09